phenoscape/scate-shortcourse

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phenoscape/scate-shortcourse

phenoscape

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Package for the "Phylogenetic comparative analysis of integrated anatomical traits" short course

scowl

A Scala DSL for programming with the OWL API.

owlery

Owlery is a set of REST web services which allow querying of an OWL reasoner containing a configured set of ontologies.

owlet

A little OWL in SPARQL.

Phenex

Phenex is an application for annotating character matrix files with ontology terms using the Entity-Quality syntax for describing phenotypes.

phenoscape-nlp

Source for the CharaParser application, which uses natural language processing to propose EQ-based phenotype annotations.

sparql-utils

Scala SPARQL utilities

rphenoscape

R package to make phenotypic traits from the Phenoscape Knowledgebase available from within R.

taxrank

Taxonomic rank ontology

pheno-repo

Repository of OWL-based phenotypic descriptions

phenoscape-owl-tools

OWL-based reasoning and data processing utilities for assembling the Phenoscape RDF knowledgebase.

KB-DataFest-2017

Promoting Phenoscape KB Data Access and Interoperability Codefest, 2017

charaparser-unsupervised

Java implementation of the unsupervised bootstrapping algorithm used within the CharaParser application.

TraitFest-2023

Main repository for information advertising and documenting the 2023 SCATE TraitFest

PhenoscapeWeb

Web application for exploring the OBD-based Phenoscape Knowledgebase.

pheno-jsonld

notes on an interoperable format for expressing phenotypic data for taxa

vertebrate-taxonomy-ontology

The Vertebrate Taxonomy Ontology aims to provide one comprehensive hierarchy for both extinct and extant vertebrates

phenoscape-data

NeXML data files annotated by Phenoscape curators.

vue2owl

Convert a VUE document to an OWL ontology.

phenoscape-kb-rdf-data

RDF/XML serialization of the Phenoscape RDF knowledgebase.

phenoscaperb

Phenoscape Ruby gem

PhenoscapeDataLoader

Data processing utilities for assembling the legacy OBD-based Phenoscape knowledgebase.

PhenoscapeOBD-WS

Phenoscape data services web application for the legacy OBD-based knowledgebase.

teleost-taxonomy-ontology

An ontology covering the taxonomy of teleosts (bony fish). Now superseded by Vertebrate Taxonomy Ontology.

phenoscape-kb-services

Web services application for the Phenoscape RDF knowledgebase.

nexldrb

NeXML - JSON-LD converter

phenoscape.github.com

Phenoscape website

synctool-oboedit

Synchronization tool for OBO-Edit. This plugin is being obsoleted by mappings provided by the Uberon project.

EnviroPackets

exploration of using phenopackets to describe environments

blazegraph-docker

Docker image for running a Blazegraph server

Phenotype-Matching-Queries

Queries on the OBD-based Phenoscape KB to suggest possible matching phenotypes and profiles (sets of phenotypes).

pipeline-tools

Command-line environment needed to build Phenoscape Knowledgebase