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scowl
A Scala DSL for programming with the OWL API.owlery
Owlery is a set of REST web services which allow querying of an OWL reasoner containing a configured set of ontologies.owlet
A little OWL in SPARQL.Phenex
Phenex is an application for annotating character matrix files with ontology terms using the Entity-Quality syntax for describing phenotypes.phenoscape-nlp
Source for the CharaParser application, which uses natural language processing to propose EQ-based phenotype annotations.sparql-utils
Scala SPARQL utilitiesscate-shortcourse
Package for the "Phylogenetic comparative analysis of integrated anatomical traits" short courserphenoscape
R package to make phenotypic traits from the Phenoscape Knowledgebase available from within R.taxrank
Taxonomic rank ontologypheno-repo
Repository of OWL-based phenotypic descriptionsphenoscape-owl-tools
OWL-based reasoning and data processing utilities for assembling the Phenoscape RDF knowledgebase.KB-DataFest-2017
Promoting Phenoscape KB Data Access and Interoperability Codefest, 2017charaparser-unsupervised
Java implementation of the unsupervised bootstrapping algorithm used within the CharaParser application.TraitFest-2023
Main repository for information advertising and documenting the 2023 SCATE TraitFestPhenoscapeWeb
Web application for exploring the OBD-based Phenoscape Knowledgebase.pheno-jsonld
notes on an interoperable format for expressing phenotypic data for taxavertebrate-taxonomy-ontology
The Vertebrate Taxonomy Ontology aims to provide one comprehensive hierarchy for both extinct and extant vertebratesphenoscape-data
NeXML data files annotated by Phenoscape curators.vue2owl
Convert a VUE document to an OWL ontology.phenoscape-kb-rdf-data
RDF/XML serialization of the Phenoscape RDF knowledgebase.phenoscaperb
Phenoscape Ruby gemPhenoscapeOBD-WS
Phenoscape data services web application for the legacy OBD-based knowledgebase.teleost-taxonomy-ontology
An ontology covering the taxonomy of teleosts (bony fish). Now superseded by Vertebrate Taxonomy Ontology.phenoscape-kb-services
Web services application for the Phenoscape RDF knowledgebase.nexldrb
NeXML - JSON-LD converterphenoscape.github.com
Phenoscape websitesynctool-oboedit
Synchronization tool for OBO-Edit. This plugin is being obsoleted by mappings provided by the Uberon project.EnviroPackets
exploration of using phenopackets to describe environmentsblazegraph-docker
Docker image for running a Blazegraph serverPhenotype-Matching-Queries
Queries on the OBD-based Phenoscape KB to suggest possible matching phenotypes and profiles (sets of phenotypes).pipeline-tools
Command-line environment needed to build Phenoscape KnowledgebaseLove Open Source and this site? Check out how you can help us