• Stars
    star
    1
  • Language
    Java
  • License
    MIT License
  • Created about 13 years ago
  • Updated over 11 years ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Queries on the OBD-based Phenoscape KB to suggest possible matching phenotypes and profiles (sets of phenotypes).

More Repositories

1

scowl

A Scala DSL for programming with the OWL API.
Scala
55
star
2

owlery

Owlery is a set of REST web services which allow querying of an OWL reasoner containing a configured set of ontologies.
Scala
15
star
3

owlet

A little OWL in SPARQL.
Scala
13
star
4

Phenex

Phenex is an application for annotating character matrix files with ontology terms using the Entity-Quality syntax for describing phenotypes.
Java
10
star
5

phenoscape-nlp

Source for the CharaParser application, which uses natural language processing to propose EQ-based phenotype annotations.
Java
7
star
6

sparql-utils

Scala SPARQL utilities
Scala
5
star
7

rphenoscape

R package to make phenotypic traits from the Phenoscape Knowledgebase available from within R.
R
5
star
8

taxrank

Taxonomic rank ontology
Makefile
4
star
9

KB-DataFest-2017

Promoting Phenoscape KB Data Access and Interoperability Codefest, 2017
4
star
10

pheno-repo

Repository of OWL-based phenotypic descriptions
Makefile
4
star
11

scate-shortcourse

Package for the "Phylogenetic comparative analysis of integrated anatomical traits" short course
R
4
star
12

phenoscape-owl-tools

OWL-based reasoning and data processing utilities for assembling the Phenoscape RDF knowledgebase.
Scala
4
star
13

charaparser-unsupervised

Java implementation of the unsupervised bootstrapping algorithm used within the CharaParser application.
Java
3
star
14

TraitFest-2023

Main repository for information advertising and documenting the 2023 SCATE TraitFest
R
3
star
15

PhenoscapeWeb

Web application for exploring the OBD-based Phenoscape Knowledgebase.
JavaScript
3
star
16

vertebrate-taxonomy-ontology

The Vertebrate Taxonomy Ontology aims to provide one comprehensive hierarchy for both extinct and extant vertebrates
2
star
17

pheno-jsonld

notes on an interoperable format for expressing phenotypic data for taxa
2
star
18

phenoscape-data

NeXML data files annotated by Phenoscape curators.
Java
2
star
19

vue2owl

Convert a VUE document to an OWL ontology.
Scala
2
star
20

phenoscape-kb-rdf-data

RDF/XML serialization of the Phenoscape RDF knowledgebase.
2
star
21

PhenoscapeOBD-WS

Phenoscape data services web application for the legacy OBD-based knowledgebase.
Java
2
star
22

phenoscaperb

Phenoscape Ruby gem
Ruby
2
star
23

PhenoscapeDataLoader

Data processing utilities for assembling the legacy OBD-based Phenoscape knowledgebase.
Java
2
star
24

teleost-taxonomy-ontology

An ontology covering the taxonomy of teleosts (bony fish). Now superseded by Vertebrate Taxonomy Ontology.
1
star
25

phenoscape-kb-services

Web services application for the Phenoscape RDF knowledgebase.
Scala
1
star
26

nexldrb

NeXML - JSON-LD converter
Ruby
1
star
27

phenoscape.github.com

Phenoscape website
JavaScript
1
star
28

synctool-oboedit

Synchronization tool for OBO-Edit. This plugin is being obsoleted by mappings provided by the Uberon project.
Java
1
star
29

EnviroPackets

exploration of using phenopackets to describe environments
Shell
1
star
30

blazegraph-docker

Docker image for running a Blazegraph server
Dockerfile
1
star
31

pipeline-tools

Command-line environment needed to build Phenoscape Knowledgebase
Dockerfile
1
star