minillinim/mikezbioscripts

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Rank 3,897,138 (Top 79 %)
Language
Perl
Created over 13 years ago
Updated over 9 years ago

minillinim/mikezbioscripts

minillinim

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A collection of scripts that I used to use. Abandoned now, use them at your own peril...

ellipsoid

Example code for enclosing points in an elipsoid

stackedBarGraph

stackedBarGraph

SimpleHMMER

Super simple wrapper for running hmmer3 and parsing the output

templates

A set of templates which make coding more funner!

GroopM

Place holder for the old GroopM site

SaSSY

Short read assembler for illumina-type DNA sequence data

gff2fasta

convert a gff file into fasta format

BamTyper

Working with paired reads in BAM format

BamM

Do things with BAM/BWA

ionPairer

create a rough scaffold using ion torrent MP reads

explodeGenbank

Separate a multiple genbank file into separate records

BusMemeGenerator

Code for the QCA / transport action group bus route meme project

ParseM

drupal_sync

sync a dev and production drupal installation

mikePlotLib

sam2fpkg

Convert a sam mapping file and gff3 annotation file to find transcriptomic level in microbial transciptomic data sets

GroopM_test_data

Data used for validating GroopM

APP

Ace Pyrotag Pipeline - wrapper for QIIME and R - interfaces with PyroDB

ScreamingBackpack

ScreamingBackpack