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ellipsoid
Example code for enclosing points in an elipsoidstackedBarGraph
stackedBarGraphSimpleHMMER
Super simple wrapper for running hmmer3 and parsing the outputGroopM
Place holder for the old GroopM sitemikezbioscripts
A collection of scripts that I used to use. Abandoned now, use them at your own peril...SaSSY
Short read assembler for illumina-type DNA sequence datagff2fasta
convert a gff file into fasta formatBamTyper
Working with paired reads in BAM formatBamM
Do things with BAM/BWAionPairer
create a rough scaffold using ion torrent MP readsexplodeGenbank
Separate a multiple genbank file into separate recordsBusMemeGenerator
Code for the QCA / transport action group bus route meme projectParseM
ParseMdrupal_sync
sync a dev and production drupal installationmikePlotLib
mikePlotLibsam2fpkg
Convert a sam mapping file and gff3 annotation file to find transcriptomic level in microbial transciptomic data setsGroopM_test_data
Data used for validating GroopMAPP
Ace Pyrotag Pipeline - wrapper for QIIME and R - interfaces with PyroDBScreamingBackpack
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