minillinim/ionPairer

Stars
2
Language
Perl
License
GNU General Publi...
Created about 12 years ago
Updated about 11 years ago

minillinim/ionPairer

minillinim

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create a rough scaffold using ion torrent MP reads

ellipsoid

Example code for enclosing points in an elipsoid

stackedBarGraph

stackedBarGraph

SimpleHMMER

Super simple wrapper for running hmmer3 and parsing the output

templates

A set of templates which make coding more funner!

GroopM

Place holder for the old GroopM site

mikezbioscripts

A collection of scripts that I used to use. Abandoned now, use them at your own peril...

SaSSY

Short read assembler for illumina-type DNA sequence data

gff2fasta

convert a gff file into fasta format

BamTyper

Working with paired reads in BAM format

BamM

Do things with BAM/BWA

explodeGenbank

Separate a multiple genbank file into separate records

BusMemeGenerator

Code for the QCA / transport action group bus route meme project

ParseM

drupal_sync

sync a dev and production drupal installation

mikePlotLib

sam2fpkg

Convert a sam mapping file and gff3 annotation file to find transcriptomic level in microbial transciptomic data sets

GroopM_test_data

Data used for validating GroopM

APP

Ace Pyrotag Pipeline - wrapper for QIIME and R - interfaces with PyroDB

ScreamingBackpack

ScreamingBackpack