Discover joergen7/phylogeny Open Source project

library for modeling Petri nets in Erlang

231

gen_pnet

Erlang foreign function interface.

effi

A basic worker pool manager for Erlang to showcase gen_pnet.

gruff

common runtime environment for distributed programming languages

cre

A git repository management tool

gpull

Basic combinatorics for Erlang lists.

lib_combin

Semantic reference of the Cuneiform distributed programming language

cf_reference

Dynamic Programming in Erlang.

lib_dp

Cuneiform client implementation

cf_client

A Functional Workflow Language

cuneiform-legacy

Java

variant-call

A variant calling workflow

A scaffold for Erlang IRC bots.

gen_ircclient

dynamically typed functional programming language with a Lisp syntax

trif

Assembly

chef-bioinf-worker

Chef cookbook to set up worker node for various bioinformatics workflows

Cuneiform worker implementation

cf_worker

Chef cookbook to setup vanilla Cuneiform

chef-cuneiform

A bisulfite read mapper and methylation caller

bismark

Perl

gen_workflow

A behavior for specifying data analysis applications in Erlang.

Basic utilities for language models in Common Lisp

lang-util

Common Lisp

cfplot

Cuneiform log visualization tool

A collection of small, instructive examples using gen_pnet.

gen_pnet_examples

Simple Erlang configuration handling library.

lib_conf

Standalone Cuneiform interpreter

cf_lang

Documentation for the Cuneiform programming language

cuneiform-doc

Python

methylation

A methylation workflow

Java bindings for Cuneiform

S-expression parser

C++

cf-java

Java

render-farm

render farm using POV-Ray

POV-Ray SDL

pnet

Petri net library based on Racket threads.

k-means implementation, recursive, allows partitioned input data

k-means

Syntax highlighting for Cuneiform in Sublime Text 3

cuneiform-sublime

cfui

Cuneiform Workflow Management Portal

Python

cuneiform-examples

Collection of small, self-contained Cuneiform code examples.

variant-call-gatk

Germline variant calling workflow using GATK

HTML

plang

Racket #lang for places and parallel computing

Syntax highlighting for Cuneiform in Atom

cuneiform-atom

rna-seq

Cuneiform RNA-seq workflow

metagenomics

A metagenomics workflow

A Cuneiform IRC chatterbot.

cuneiform_irc

Dangerous Waters documentation site

devilfish-flotilla

Python

mqtt-client

Racket MQTT client implementation based on paho.mqtt.c

k-means workflow example in Cuneiform

distributed-k-means

Miscellaneous Chef cookbooks

chef-misc

Canonical word count workflow

wordcount

chef-rebar3

rebar3 chef cookbook

A consensus prediction workflow for MS data

consensus-prediction

HTML

gccount

Counting the GC content in a given FastA file

Playground for Racket graphics

fractal

chip-seq

A ChIP-Seq workflow

An example application using gruff.

gruff_example

Variant calling on RNA-Seq data

variant_call_rna

Model implementation of Cuneiform in Erlang

cf-model

mirna-discovery

miRNA discovery workflow

C++ language model and compiler in Common Lisp

clcc

Common Lisp

brief

script to create briefing documents and kneeboard pages

Awk

libpaho-mqtt3-x86_64-linux-natipkg

Packages libpaho-mqtt3 for the Racket package build server

soap

Racket SOAP