joergen7/methylation

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Language
Ruby
Created about 9 years ago
Updated about 6 years ago

joergen7/methylation

joergen7

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A methylation workflow

cuneiform

Cuneiform distributed programming language

gen_pnet

library for modeling Petri nets in Erlang

effi

Erlang foreign function interface.

gruff

A basic worker pool manager for Erlang to showcase gen_pnet.

cre

common runtime environment for distributed programming languages

gpull

A git repository management tool

lib_combin

Basic combinatorics for Erlang lists.

cf_reference

Semantic reference of the Cuneiform distributed programming language

lib_dp

Dynamic Programming in Erlang.

cf_client

Cuneiform client implementation

cuneiform-legacy

A Functional Workflow Language

variant-call

A variant calling workflow

gen_ircclient

A scaffold for Erlang IRC bots.

trif

dynamically typed functional programming language with a Lisp syntax

chef-bioinf-worker

Chef cookbook to set up worker node for various bioinformatics workflows

cf_worker

Cuneiform worker implementation

chef-cuneiform

Chef cookbook to setup vanilla Cuneiform

bismark

A bisulfite read mapper and methylation caller

gen_workflow

A behavior for specifying data analysis applications in Erlang.

lang-util

Basic utilities for language models in Common Lisp

cfplot

Cuneiform log visualization tool

gen_pnet_examples

A collection of small, instructive examples using gen_pnet.

lib_conf

Simple Erlang configuration handling library.

cf_lang

Standalone Cuneiform interpreter

cuneiform-doc

Documentation for the Cuneiform programming language

se

S-expression parser

cf-java

Java bindings for Cuneiform

render-farm

render farm using POV-Ray

pnet

Petri net library based on Racket threads.

k-means

k-means implementation, recursive, allows partitioned input data

cuneiform-sublime

Syntax highlighting for Cuneiform in Sublime Text 3

cfui

Cuneiform Workflow Management Portal

cuneiform-examples

Collection of small, self-contained Cuneiform code examples.

variant-call-gatk

Germline variant calling workflow using GATK

plang

Racket #lang for places and parallel computing

cuneiform-atom

Syntax highlighting for Cuneiform in Atom

rna-seq

Cuneiform RNA-seq workflow

metagenomics

A metagenomics workflow

cuneiform_irc

A Cuneiform IRC chatterbot.

phylogeny

Phylogenetic analysis of the CHASE domain in early diverging plants

devilfish-flotilla

Dangerous Waters documentation site

mqtt-client

Racket MQTT client implementation based on paho.mqtt.c

distributed-k-means

k-means workflow example in Cuneiform

chef-misc

Miscellaneous Chef cookbooks

wordcount

Canonical word count workflow

chef-rebar3

rebar3 chef cookbook

consensus-prediction

A consensus prediction workflow for MS data

gccount

Counting the GC content in a given FastA file

fractal

Playground for Racket graphics

chip-seq

A ChIP-Seq workflow

gruff_example

An example application using gruff.

variant_call_rna

Variant calling on RNA-Seq data

cf-model

Model implementation of Cuneiform in Erlang

mirna-discovery

miRNA discovery workflow

clcc

C++ language model and compiler in Common Lisp

brief

script to create briefing documents and kneeboard pages

libpaho-mqtt3-x86_64-linux-natipkg

Packages libpaho-mqtt3 for the Racket package build server

soap