组学流程代码分享
目前本人亲自实践过的NGS组学流程代码已经有了10多个,这个github里面的3个例子其实是2年前的代码了,不过流程虽然是在变化,但是这些代码大部分仍然是有效的,目前也没有时间更新最新的代码在GitHub里面。
毕竟整理也是蛮耗费功夫的,大家可以去我们生信技能树公众号里面查看最新分享,我也会尽快抽空整理好。
最近重新制作了NGS相关视频教程,几个NGS组学实战代码是:
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GEO
scRNA_smart_seq2
tcga_example
my_WGCNA
5years
my-R
a small collection for my R scriptsR_bilibili
bioinformatics123
AnnoProbe
methy_array
scRNA_10X
GEOmirror
TCGA_BRCA
humanid
my first R package just for testingMETABRIC
biotrainee
idmap3
cnv
idmap1
idmap2
ML
myTCGA
It's just a personal record for studying how to analysis TCGA data(expression+mutation+methylation+CNV)mouse-xx-xy-C1
GSE76275-TNBC
myShiny
survival
gtex_BRCA
my-perl
some short but practical PERL script in NGS data analysismyScRNA-seq
TF_map
IDmap
BPscRNAseq
IRseq
bioinformatics_links
test1
docker
for_paper
geneSet
TCGA_AML
VCFpca
exprSet
bioweb
bioconductor_learn
test
blog
hellow_world
TCGA_AML_Glycolysis
where_is_my_Mr_Right
plot123
pan-cancer-expression
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