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kindred
A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).pubrunner
A framework for keeping biomedical text mining result up-to-datecancermine
Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancerpgxmine
Text mining for pharmacogenomic associations for PharmGKBcivicmine
Text mining cancer biomarkers for the CIVIC databasebiotext
Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!knowledgediscovery
Analysis code for knowledge discovery projectVERSE
Vancouver Event and Relation System for Extractioncorona-ml
Machine learning to text-mine coronavirus research for CoronaCentral.aibrokenlinks
Tool for scanning a website for broken linksubcthesis_bookdown
Skeleton code for a UBC thesis using R bookdowncorona-web
Website for viewing database of Coronavirus research at CoronaCentral.aiGNBR
Tools to work with Global Network of Biomedical Relationships dataOpenSesamIE
A Open Information Extraction tool for extracting relations from textbio2vec
Scripts to run word2vec on PubMed corpus filesglasgowcs_labtest
Testing framework for online labsannotator
text_classification_in_R
Demonstration of some text classification methods in Rtumorantigens
Text mining tumor antigens for cancer immunotherapy researchblah4
Code for BLAH4 hackathon project in Kashiwa, Japan - Knowledge discovery with relationspubtator
Running various NER tools on big corporafoodrelations
Nutrigenomics example text mining project using PubRunnerdocstringtest
Little package to test if docstrings are up-to-date in Python codetextasdata_bugbounty
Bug bounty programme for TextAsData coursethesis
My PhD thesis on biomedical text miningLove Open Source and this site? Check out how you can help us