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kindred
A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).pubrunner
A framework for keeping biomedical text mining result up-to-datecancermine
Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancerpgxmine
Text mining for pharmacogenomic associations for PharmGKBcivicmine
Text mining cancer biomarkers for the CIVIC databasebiowordlists
Biomedical wordlists (of drugs, genes, etc) for several text mining projectsbiotext
Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!knowledgediscovery
Analysis code for knowledge discovery projectVERSE
Vancouver Event and Relation System for Extractioncorona-ml
Machine learning to text-mine coronavirus research for CoronaCentral.aibrokenlinks
Tool for scanning a website for broken linksubcthesis_bookdown
Skeleton code for a UBC thesis using R bookdowncorona-web
Website for viewing database of Coronavirus research at CoronaCentral.aiGNBR
Tools to work with Global Network of Biomedical Relationships databio2vec
Scripts to run word2vec on PubMed corpus filesglasgowcs_labtest
Testing framework for online labsannotator
text_classification_in_R
Demonstration of some text classification methods in Rtumorantigens
Text mining tumor antigens for cancer immunotherapy researchblah4
Code for BLAH4 hackathon project in Kashiwa, Japan - Knowledge discovery with relationspubtator
Running various NER tools on big corporafoodrelations
Nutrigenomics example text mining project using PubRunnerdocstringtest
Little package to test if docstrings are up-to-date in Python codetextasdata_bugbounty
Bug bounty programme for TextAsData coursethesis
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