Jake Lever (@jakelever)
github

jakelever

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  • Stars
    star
    386
  • Global Rank 71,024 (Top 3 %)
  • Followers 82
  • Registered over 11 years ago
  • Most used languages
    Python
         73.1 %
    TeX
         11.5 %
    R
         7.7 %
    Perl
         3.8 %
    CSS
         3.8 %
  • Location πŸ‡ΊπŸ‡Έ United States
  • Country Total Rank 18,376
  • Country Ranking
    TeX
         519
    R
         912
    Python
         3,879
    Perl
         4,384
    CSS
         7,501

Top repositories

1

kindred

A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).
Python
154
star
2

pubrunner

A framework for keeping biomedical text mining result up-to-date
Python
41
star
3

cancermine

Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer
R
40
star
4

pgxmine

Text mining for pharmacogenomic associations for PharmGKB
TeX
26
star
5

civicmine

Text mining cancer biomarkers for the CIVIC database
Python
21
star
6

biowordlists

Biomedical wordlists (of drugs, genes, etc) for several text mining projects
Python
16
star
7

biotext

Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!
Python
13
star
8

knowledgediscovery

Analysis code for knowledge discovery project
Python
12
star
9

VERSE

Vancouver Event and Relation System for Extraction
Python
12
star
10

corona-ml

Machine learning to text-mine coronavirus research for CoronaCentral.ai
Python
9
star
11

brokenlinks

Tool for scanning a website for broken links
Python
6
star
12

ubcthesis_bookdown

Skeleton code for a UBC thesis using R bookdown
TeX
5
star
13

corona-web

Website for viewing database of Coronavirus research at CoronaCentral.ai
CSS
5
star
14

GNBR

Tools to work with Global Network of Biomedical Relationships data
Python
5
star
15

OpenSesamIE

A Open Information Extraction tool for extracting relations from text
Python
3
star
16

bio2vec

Scripts to run word2vec on PubMed corpus files
Python
2
star
17

glasgowcs_labtest

Testing framework for online labs
Python
1
star
18

annotator

Python
1
star
19

text_classification_in_R

Demonstration of some text classification methods in R
R
1
star
20

tumorantigens

Text mining tumor antigens for cancer immunotherapy research
Python
1
star
21

blah4

Code for BLAH4 hackathon project in Kashiwa, Japan - Knowledge discovery with relations
Python
1
star
22

pubtator

Running various NER tools on big corpora
Perl
1
star
23

foodrelations

Nutrigenomics example text mining project using PubRunner
Python
1
star
24

thesis

My PhD thesis on biomedical text mining
TeX
1
star
25

docstringtest

Little package to test if docstrings are up-to-date in Python code
Python
1
star
26

textasdata_bugbounty

Bug bounty programme for TextAsData course
Python
1
star