• Stars
    star
    1
  • Language
    Python
  • License
    MIT License
  • Created almost 7 years ago
  • Updated almost 7 years ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Nutrigenomics example text mining project using PubRunner

More Repositories

1

kindred

A Python biomedical relation extraction package that uses a supervised approach (i.e. needs training data).
Python
155
star
2

pubrunner

A framework for keeping biomedical text mining result up-to-date
Python
41
star
3

cancermine

Text-mined knowledgebase for drivers, oncogenes and tumor suppressors in cancer
R
40
star
4

pgxmine

Text mining for pharmacogenomic associations for PharmGKB
TeX
26
star
5

civicmine

Text mining cancer biomarkers for the CIVIC database
Python
21
star
6

biowordlists

Biomedical wordlists (of drugs, genes, etc) for several text mining projects
Python
16
star
7

biotext

Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!
Python
13
star
8

knowledgediscovery

Analysis code for knowledge discovery project
Python
12
star
9

VERSE

Vancouver Event and Relation System for Extraction
Python
12
star
10

corona-ml

Machine learning to text-mine coronavirus research for CoronaCentral.ai
Python
9
star
11

brokenlinks

Tool for scanning a website for broken links
Python
6
star
12

ubcthesis_bookdown

Skeleton code for a UBC thesis using R bookdown
TeX
5
star
13

corona-web

Website for viewing database of Coronavirus research at CoronaCentral.ai
CSS
5
star
14

GNBR

Tools to work with Global Network of Biomedical Relationships data
Python
5
star
15

OpenSesamIE

A Open Information Extraction tool for extracting relations from text
Python
3
star
16

bio2vec

Scripts to run word2vec on PubMed corpus files
Python
2
star
17

glasgowcs_labtest

Testing framework for online labs
Python
1
star
18

annotator

Python
1
star
19

text_classification_in_R

Demonstration of some text classification methods in R
R
1
star
20

tumorantigens

Text mining tumor antigens for cancer immunotherapy research
Python
1
star
21

blah4

Code for BLAH4 hackathon project in Kashiwa, Japan - Knowledge discovery with relations
Python
1
star
22

pubtator

Running various NER tools on big corpora
Perl
1
star
23

docstringtest

Little package to test if docstrings are up-to-date in Python code
Python
1
star
24

textasdata_bugbounty

Bug bounty programme for TextAsData course
Python
1
star
25

thesis

My PhD thesis on biomedical text mining
TeX
1
star