hallamlab/mlLGPR hallamlab/mlLGPR

  • Stars
    star
    6
  • Rank 2,539,965 (Top 51 %)
  • Language
    Python
  • License
    GNU General Publi...
  • Created almost 6 years ago
  • Updated over 1 year ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
hallamlab/mlLGPR
github

hallamlab

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Metabolic pathway inference using multi-label classification with rich pathway features

More Repositories

1

metapathways2

MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds
Python
33
star
2

TreeSAPP

A Python package for gene-centric taxonomic and functional classification using phylogenetic placement
Python
25
star
3

mp_tutorial

A repository of notes, code, slides, and resources for the MetaPathways tutorial being held February 2014 at UBC.
R
19
star
4

LAST-Plus

Parallel implementation of the LAST aligner
C++
18
star
5

pathway2vec

Leveraging Heterogeneous Network Embedding for Metabolic Pathway Prediction
Python
15
star
6

LCAStar

Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree
HTML
14
star
7

FragGeneScanPlus

Scalable high-throughput short-read open reading frame prediction
C
12
star
8

MetaPathways

A modular pipeline for constructing Pathway/Genome Databases from environmental sequence information
Nu
12
star
9

utilities

A repository of bioinformatics utilities and scripts commonly used in the Steven J. Hallam Laboratory in the Microbiology & Immunology Department of the University of British Columbia (UBC), Vancouver, British Columbia, Canada.
Python
7
star
10

samsum

A light-weight python package for summarizing sequence coverage from SAM and BAM files
Python
5
star
11

FAST

FAST Aligner
C++
5
star
12

SABer

SAG Anchored Binner
Python
3
star
13

MetaPathwaysGUI

C++
3
star
14

koonkie

Hadoop framework for metagenomic processing
3
star
15

fastLSA

An implementation of the Local Similarity Statistics using an approximate p-value upper bound
2
star
16

FabFos

A python-driven fosmid processing pipeline
Python
1
star
17

SOFA

Short-ORF Functional Annotation Pipeline
C++
1
star
18

RefPkgs

Repository for TreeSAPP reference packages
Python
1
star
19

sgRNAble

Python
1
star
20

reMap

reMap: relabeling metabolic pathway data with groups to improve prediction outcomes
Python
1
star