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metapathways2
MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and cloudsTreeSAPP
A Python package for gene-centric taxonomic and functional classification using phylogenetic placementmp_tutorial
A repository of notes, code, slides, and resources for the MetaPathways tutorial being held February 2014 at UBC.LAST-Plus
Parallel implementation of the LAST alignerpathway2vec
Leveraging Heterogeneous Network Embedding for Metabolic Pathway PredictionLCAStar
Alternative taxonomic consensus algorithms based on the NCBI taxonomy treeFragGeneScanPlus
Scalable high-throughput short-read open reading frame predictionMetaPathways
A modular pipeline for constructing Pathway/Genome Databases from environmental sequence informationutilities
A repository of bioinformatics utilities and scripts commonly used in the Steven J. Hallam Laboratory in the Microbiology & Immunology Department of the University of British Columbia (UBC), Vancouver, British Columbia, Canada.mlLGPR
Metabolic pathway inference using multi-label classification with rich pathway featuressamsum
A light-weight python package for summarizing sequence coverage from SAM and BAM filesFAST
FAST AlignerMetaPathwaysGUI
koonkie
Hadoop framework for metagenomic processingfastLSA
An implementation of the Local Similarity Statistics using an approximate p-value upper boundFabFos
A python-driven fosmid processing pipelineSOFA
Short-ORF Functional Annotation PipelineRefPkgs
Repository for TreeSAPP reference packagessgRNAble
reMap
reMap: relabeling metabolic pathway data with groups to improve prediction outcomesLove Open Source and this site? Check out how you can help us