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metapathways2
MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and cloudsTreeSAPP
A Python package for gene-centric taxonomic and functional classification using phylogenetic placementmp_tutorial
A repository of notes, code, slides, and resources for the MetaPathways tutorial being held February 2014 at UBC.LAST-Plus
Parallel implementation of the LAST alignerpathway2vec
Leveraging Heterogeneous Network Embedding for Metabolic Pathway PredictionLCAStar
Alternative taxonomic consensus algorithms based on the NCBI taxonomy treeFragGeneScanPlus
Scalable high-throughput short-read open reading frame predictionMetaPathways
A modular pipeline for constructing Pathway/Genome Databases from environmental sequence informationutilities
A repository of bioinformatics utilities and scripts commonly used in the Steven J. Hallam Laboratory in the Microbiology & Immunology Department of the University of British Columbia (UBC), Vancouver, British Columbia, Canada.mlLGPR
Metabolic pathway inference using multi-label classification with rich pathway featuressamsum
A light-weight python package for summarizing sequence coverage from SAM and BAM filesFAST
FAST AlignerSABer
SAG Anchored BinnerMetaPathwaysGUI
koonkie
Hadoop framework for metagenomic processingfastLSA
An implementation of the Local Similarity Statistics using an approximate p-value upper boundSOFA
Short-ORF Functional Annotation PipelineRefPkgs
Repository for TreeSAPP reference packagessgRNAble
reMap
reMap: relabeling metabolic pathway data with groups to improve prediction outcomesLove Open Source and this site? Check out how you can help us