Hallam Lab (@hallamlab)
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hallamlab

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  • Stars
    star
    198
  • Global Org. Rank 40,606 (Top 13 %)
  • Registered about 12 years ago
  • Most used languages
    Python
         57.9 %
    C++
         21.1 %
    R
         5.3 %
    Nu     5.3 %
    HTML
         5.3 %
    C
         5.3 %
  • Location 🇨🇦 Canada
  • Country Total Rank 3,666
  • Country Ranking
    Nu     1
    R
         169
    HTML
         804
    C++
         823
    C
         949
    Python
         1,044

Top repositories

1

metapathways2

MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds
Python
33
star
2

TreeSAPP

A Python package for gene-centric taxonomic and functional classification using phylogenetic placement
Python
25
star
3

mp_tutorial

A repository of notes, code, slides, and resources for the MetaPathways tutorial being held February 2014 at UBC.
R
19
star
4

LAST-Plus

Parallel implementation of the LAST aligner
C++
18
star
5

pathway2vec

Leveraging Heterogeneous Network Embedding for Metabolic Pathway Prediction
Python
15
star
6

LCAStar

Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree
HTML
14
star
7

FragGeneScanPlus

Scalable high-throughput short-read open reading frame prediction
C
12
star
8

MetaPathways

A modular pipeline for constructing Pathway/Genome Databases from environmental sequence information
Nu
12
star
9

utilities

A repository of bioinformatics utilities and scripts commonly used in the Steven J. Hallam Laboratory in the Microbiology & Immunology Department of the University of British Columbia (UBC), Vancouver, British Columbia, Canada.
Python
7
star
10

mlLGPR

Metabolic pathway inference using multi-label classification with rich pathway features
Python
6
star
11

samsum

A light-weight python package for summarizing sequence coverage from SAM and BAM files
Python
5
star
12

FAST

FAST Aligner
C++
5
star
13

SABer

SAG Anchored Binner
Python
3
star
14

MetaPathwaysGUI

C++
3
star
15

koonkie

Hadoop framework for metagenomic processing
3
star
16

fastLSA

An implementation of the Local Similarity Statistics using an approximate p-value upper bound
2
star
17

FabFos

A python-driven fosmid processing pipeline
Python
1
star
18

SOFA

Short-ORF Functional Annotation Pipeline
C++
1
star
19

RefPkgs

Repository for TreeSAPP reference packages
Python
1
star
20

sgRNAble

Python
1
star
21

reMap

reMap: relabeling metabolic pathway data with groups to improve prediction outcomes
Python
1
star