cobilab/geco2 cobilab/geco2

  • Stars
    star
    8
  • Rank 2,047,431 (Top 42 %)
  • Language
    C
  • License
    GNU General Publi...
  • Created over 5 years ago
  • Updated 3 months ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
cobilab/geco2
github

cobilab

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

An improved compression tool for DNA sequences

More Repositories

1

cryfa

A secure encryption tool for genomic data
C++
55
star
2

gto

A genomics-proteomics toolkit
C
47
star
3

falcon

A tool to infer metagenomic sample composition
C
21
star
4

smash

A tool to find and visualize rearrangements in DNA sequences
C
16
star
5

geco3

An efficient DNA sequence compressor using Neural Networks
C
12
star
6

alcor

Alignment-free simulation, computation, and visualization of Low-compexity regions in biological data
C
9
star
7

geco

A tool for compression and analysis of DNA sequences
C
8
star
8

jarvis

Efficient lossless compression of genomic sequences
C
8
star
9

chester

A memory efficient tool to map and visualize evolutionary regions
C
6
star
10

gto2

The second version of the genomics-proteomics toolkit
C
6
star
11

eagle

An ultra-fast tool to find relative absent words in genomic data
C
5
star
12

HumanGenome

How compressible is a human genome sequence?
Shell
5
star
13

RFSC

Reference-Free Sequence Classification Tool for DNA sequences in metagenomic samples
Shell
4
star
14

ac

A lossless compression tool for Amino Acid sequences
C
4
star
15

ac2

An efficient amino acid sequence compressor using Neural Networks
C
4
star
16

altair

AltaiR: a C toolkit for alignment-free and spatial-temporal analysis of multi-FASTA data
C
3
star
17

jarvis2

Efficient DNA sequence compression
C
3
star
18

jarvis3

Efficient compression of biological data
C
3
star
19

magnet

An ultra-fast and high-sensitive tool to filter specific DNA content
C
2
star
20

cobilab.github.io

Cobilab website
CSS
2
star
21

CassavaGenome

How compressible is a Cassava genome sequence?
Shell
2
star
22

FASTA-ANALYSIS

Sorting of DNA sequences within a Multi-Fasta file
Shell
1
star
23

OAWK

Shell
1
star
24

MizaR

A sorting method for encoding metagenomic data
Shell
1
star
25

fruit

Fast Relative Uniqueness fInder for proTein sequences
Shell
1
star
26

SynTegra

A computational tool for simulation of viral synthetic integrations
C
1
star
27

spark

This program schools, simulates, and searches for exact or approximate Turing Machines (TMs) with specific characteristics.
C
1
star
28

cpm-fcm

An encoder for biological sequences using Copy Models and Finite-context models
1
star
29

nn-expert-mixer

C++
1
star
30

evo

Evolutionary patterns in SARS-CoV-2 genomes
C
1
star