Computational Biology Laboratory (@cobilab)
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cobilab

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  • Stars
    star
    245
  • Global Org. Rank 36,229 (Top 12 %)
  • Registered over 5 years ago
  • Most used languages
    C
         64.5 %
    Shell
         25.8 %
    C++
         6.5 %
    CSS
         3.2 %
  • Location πŸ‡΅πŸ‡Ή Portugal
  • Country Total Rank 375
  • Country Ranking
    C
         10
    C++
         49
    Shell
         99
    CSS
         340

Top repositories

1

cryfa

A secure encryption tool for genomic data
C++
55
star
2

gto

A genomics-proteomics toolkit
C
46
star
3

falcon

A tool to infer metagenomic sample composition
C
21
star
4

smash

A tool to find and visualize rearrangements in DNA sequences
C
16
star
5

geco3

An efficient DNA sequence compressor using Neural Networks
C
12
star
6

alcor

Alignment-free simulation, computation, and visualization of Low-compexity regions in biological data
C
10
star
7

geco

A tool for compression and analysis of DNA sequences
C
8
star
8

jarvis

Efficient lossless compression of genomic sequences
C
8
star
9

geco2

An improved compression tool for DNA sequences
C
8
star
10

chester

A memory efficient tool to map and visualize evolutionary regions
C
6
star
11

gto2

The second version of the genomics-proteomics toolkit
C
6
star
12

eagle

An ultra-fast tool to find relative absent words in genomic data
C
5
star
13

HumanGenome

How compressible is a human genome sequence?
Shell
5
star
14

ac2

An efficient amino acid sequence compressor using Neural Networks
C
5
star
15

RFSC

Reference-Free Sequence Classification Tool for DNA sequences in metagenomic samples
Shell
4
star
16

ac

A lossless compression tool for Amino Acid sequences
C
4
star
17

altair

AltaiR: a C toolkit for alignment-free and temporal analysis of multi-FASTA data
C
4
star
18

jarvis2

Efficient DNA sequence compression
C
3
star
19

jarvis3

Efficient compression of biological data
C
3
star
20

magnet

An ultra-fast and high-sensitive tool to filter specific DNA content
C
2
star
21

cpm-fcm

An encoder for biological sequences using Copy Models and Finite-context models
2
star
22

cobilab.github.io

Cobilab website
CSS
2
star
23

CassavaGenome

How compressible is a Cassava genome sequence?
Shell
2
star
24

FASTA-ANALYSIS

Sorting of DNA sequences within a Multi-Fasta file
Shell
1
star
25

OAWK

Shell
1
star
26

MizaR

A sorting method for encoding metagenomic data
Shell
1
star
27

fruit

Fast Relative Uniqueness fInder for proTein sequences
Shell
1
star
28

SynTegra

A computational tool for simulation of viral synthetic integrations
C
1
star
29

spark

This program schools, simulates, and searches for exact or approximate Turing Machines (TMs) with specific characteristics.
C
1
star
30

nn-expert-mixer

C++
1
star
31

evo

Evolutionary patterns in SARS-CoV-2 genomes
C
1
star
32

OptimJV3

Optimize compression parameters of Jarvis3
Shell
1
star