cobilab/chester cobilab/chester

  • Stars
    star
    6
  • Rank 2,539,965 (Top 51 %)
  • Language
    C
  • License
    GNU General Publi...
  • Created over 9 years ago
  • Updated over 4 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
cobilab/chester
github

cobilab

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

A memory efficient tool to map and visualize evolutionary regions

More Repositories

1

cryfa

A secure encryption tool for genomic data
C++
55
star
2

gto

A genomics-proteomics toolkit
C
46
star
3

falcon

A tool to infer metagenomic sample composition
C
21
star
4

smash

A tool to find and visualize rearrangements in DNA sequences
C
16
star
5

geco3

An efficient DNA sequence compressor using Neural Networks
C
12
star
6

alcor

Alignment-free simulation, computation, and visualization of Low-compexity regions in biological data
C
10
star
7

geco

A tool for compression and analysis of DNA sequences
C
8
star
8

jarvis

Efficient lossless compression of genomic sequences
C
8
star
9

geco2

An improved compression tool for DNA sequences
C
8
star
10

gto2

The second version of the genomics-proteomics toolkit
C
6
star
11

eagle

An ultra-fast tool to find relative absent words in genomic data
C
5
star
12

HumanGenome

How compressible is a human genome sequence?
Shell
5
star
13

ac2

An efficient amino acid sequence compressor using Neural Networks
C
5
star
14

RFSC

Reference-Free Sequence Classification Tool for DNA sequences in metagenomic samples
Shell
4
star
15

ac

A lossless compression tool for Amino Acid sequences
C
4
star
16

altair

AltaiR: a C toolkit for alignment-free and temporal analysis of multi-FASTA data
C
4
star
17

jarvis2

Efficient DNA sequence compression
C
3
star
18

jarvis3

Efficient compression of biological data
C
3
star
19

magnet

An ultra-fast and high-sensitive tool to filter specific DNA content
C
2
star
20

cpm-fcm

An encoder for biological sequences using Copy Models and Finite-context models
2
star
21

cobilab.github.io

Cobilab website
CSS
2
star
22

CassavaGenome

How compressible is a Cassava genome sequence?
Shell
2
star
23

FASTA-ANALYSIS

Sorting of DNA sequences within a Multi-Fasta file
Shell
1
star
24

OAWK

Shell
1
star
25

MizaR

A sorting method for encoding metagenomic data
Shell
1
star
26

fruit

Fast Relative Uniqueness fInder for proTein sequences
Shell
1
star
27

SynTegra

A computational tool for simulation of viral synthetic integrations
C
1
star
28

spark

This program schools, simulates, and searches for exact or approximate Turing Machines (TMs) with specific characteristics.
C
1
star
29

nn-expert-mixer

C++
1
star
30

evo

Evolutionary patterns in SARS-CoV-2 genomes
C
1
star
31

OptimJV3

Optimize compression parameters of Jarvis3
Shell
1
star