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netwulf
Interactive visualization of networks based on Ulf Aslak's d3 web app.tacoma
Temporal networks in Python. Provides fast tools to analyze temporal contact networks and simulate dynamic processes on them using Gillespie's SSA.binpacking
Distribution of weighted items to bins (either a fixed number of bins or a fixed number of volume per bin). Data may be in form of list, dictionary, list of tuples or csv-file.reaction-diffusion
Some Python examples to obtain reaction-diffusion results and animations.epipack
Fast prototyping of epidemiological models based on reaction equations. Analyze the ODEs analytically or numerically, or run stochastic simulations on networks/well-mixed systems.COVID19CaseNumberModel
Fit the algebraic growth of case numbers in Mainland China with an SIR-containment modelsmallworld
Generate and analyze small-world networks according to the revised Watts-Strogatz model where the randomization at β = 1 is truly equal to the Erdős-Rényi network model.python-fisheye
Transform single points or arrays of points using several fisheye functions.fisheye
The original fisheye function has a visual flaw due to discontiuities in its first derivative. Here, I present a fisheye function which is continuously differentiable and hence more pleasing to the eye.qsuite
command line tool to provide an easy framework to submit computer simulations of arbitrary variety in parameter space to various cluster frameworkscouzinswarm
Simulating fish swarming behavior using the model by Iain Couzin et al.better_understanding
A track made with Sonic Piphase_space_example
Examples on how to integrate ODE systems with Python and how to plot trajectories in phase space.GillEpi
Provides classes to simulate epidemics on (potentially time-varying) networks using a Gillespie stochastic simulation algorithm or the classic agent based method.thresholdmodel
Simulate a continuous-time Watts threshold model on static networks.ThredgeCorr
Generate instances of the thresholded locally correlated edge weights network model and calculate its properties.kd-tree-js
A JavaScript implementation of a kd tree that enables fast searches for points within a range as well as nearest neighbors in d dimensionsbfmplot
A collections of snippets and tools to make my plots and my life easier.pipetex2tex
CLI to convert LaTeX source with piped "\input{|...}" commands into pure LaTeX.cividis
Register `cividis` with matplotlib, a color map optimized for color vision deficiency, as published in Nuñez, et al. (2018), PLoS ONE 13(7): e0199239 .komoog
Convert your hiking trips into soundsdrei-fragezeichen-sleeping-beauty
Analyzing whether people use "Die drei ???" to fall asleep using Spotify track popularity data.cThredgeCorr
For fast generation of edge lists from the thresholded edge correlation model.CV
My automatically generated CVsimilarity-indices
Compute diverse incidence based or abundance based similarity indices between two numpy arrays.numpyarray_to_latex
Format numpy arrays as LaTeX arrayscMHRN
Creates modular hierarchical random networks in a fast manner.radial-distance-layout
Generates a radial layout for trees whose nodes are associated with a distance to the rooteffective-distance
provides a few functions to produce an effective distance tree from a given graph and root nodede-omicron-wave-results
Results of a modelling study regarding the spread of SARS-CoV-2 VOC "Omicron" in GermanycQuadTree
Python API to a C++-implementation of a BarnesHutTree/QuadTreediese-visuelle-welt
ruby script for the track "Diese visuelle Welt" written in Sonic PicNetworkDiff
For fast diffusion simulation (or random walks) on networks.network-properties
Package to easily compute and wrap a bunch of network properties for a given graphDynGillEpi
Runs Gillespie contagion processes on time dependent contact networks.3d-fractals
create 3D fractals in blenderGTOM
Computes the general topological overlap measure for undirected and unweighted networksnwDiff
Simulates diffusion processes on networks.boarding_school_SIR
Fit SIR dynamics to the prevalence curve of an H1N1 outbreak of a British boarding school in 1978.network-centrality-visualizations
Some hacky code to visualize centrality measures in networksBiasedRandomWalks
Provides classes around biased random walks on networks.networks2021-hons-softwaredemo
Stuff that I showed or wasn't able to show during my talk in the HON satellite of the Networks 2021 conferenceLyXTufteThesis
A LyX template for PhD theses at HU BerlinLove Open Source and this site? Check out how you can help us