benmaier/cThredgeCorr benmaier/cThredgeCorr

  • Stars
    star
    2
  • Language
    Python
  • Created over 6 years ago
  • Updated about 6 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
benmaier/cThredgeCorr
github

benmaier

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

For fast generation of edge lists from the thresholded edge correlation model.

More Repositories

1

netwulf

Interactive visualization of networks based on Ulf Aslak's d3 web app.
Python
293
star
2

tacoma

Temporal networks in Python. Provides fast tools to analyze temporal contact networks and simulate dynamic processes on them using Gillespie's SSA.
C++
105
star
3

binpacking

Distribution of weighted items to bins (either a fixed number of bins or a fixed number of volume per bin). Data may be in form of list, dictionary, list of tuples or csv-file.
Python
84
star
4

reaction-diffusion

Some Python examples to obtain reaction-diffusion results and animations.
Jupyter Notebook
83
star
5

epipack

Fast prototyping of epidemiological models based on reaction equations. Analyze the ODEs analytically or numerically, or run stochastic simulations on networks/well-mixed systems.
Python
33
star
6

COVID19CaseNumberModel

Fit the algebraic growth of case numbers in Mainland China with an SIR-containment model
Python
22
star
7

smallworld

Generate and analyze small-world networks according to the revised Watts-Strogatz model where the randomization at β = 1 is truly equal to the Erdős-Rényi network model.
Python
18
star
8

python-fisheye

Transform single points or arrays of points using several fisheye functions.
Python
11
star
9

fisheye

The original fisheye function has a visual flaw due to discontiuities in its first derivative. Here, I present a fisheye function which is continuously differentiable and hence more pleasing to the eye.
JavaScript
8
star
10

qsuite

command line tool to provide an easy framework to submit computer simulations of arbitrary variety in parameter space to various cluster frameworks
Python
7
star
11

couzinswarm

Simulating fish swarming behavior using the model by Iain Couzin et al.
Python
6
star
12

better_understanding

A track made with Sonic Pi
Ruby
6
star
13

phase_space_example

Examples on how to integrate ODE systems with Python and how to plot trajectories in phase space.
Python
6
star
14

GillEpi

Provides classes to simulate epidemics on (potentially time-varying) networks using a Gillespie stochastic simulation algorithm or the classic agent based method.
Python
6
star
15

thresholdmodel

Simulate a continuous-time Watts threshold model on static networks.
Python
6
star
16

ThredgeCorr

Generate instances of the thresholded locally correlated edge weights network model and calculate its properties.
Python
5
star
17

kd-tree-js

A JavaScript implementation of a kd tree that enables fast searches for points within a range as well as nearest neighbors in d dimensions
JavaScript
4
star
18

bfmplot

A collections of snippets and tools to make my plots and my life easier.
Python
3
star
19

pipetex2tex

CLI to convert LaTeX source with piped "\input{|...}" commands into pure LaTeX.
Python
3
star
20

cividis

Register `cividis` with matplotlib, a color map optimized for color vision deficiency, as published in Nuñez, et al. (2018), PLoS ONE 13(7): e0199239 .
Python
3
star
21

komoog

Convert your hiking trips into sounds
Python
2
star
22

drei-fragezeichen-sleeping-beauty

Analyzing whether people use "Die drei ???" to fall asleep using Spotify track popularity data.
Python
2
star
23

CV

My automatically generated CV
JavaScript
2
star
24

similarity-indices

Compute diverse incidence based or abundance based similarity indices between two numpy arrays.
Python
2
star
25

numpyarray_to_latex

Format numpy arrays as LaTeX arrays
Python
2
star
26

cMHRN

Creates modular hierarchical random networks in a fast manner.
C++
2
star
27

radial-distance-layout

Generates a radial layout for trees whose nodes are associated with a distance to the root
Python
2
star
28

effective-distance

provides a few functions to produce an effective distance tree from a given graph and root node
Python
2
star
29

de-omicron-wave-results

Results of a modelling study regarding the spread of SARS-CoV-2 VOC "Omicron" in Germany
1
star
30

cQuadTree

Python API to a C++-implementation of a BarnesHutTree/QuadTree
C++
1
star
31

diese-visuelle-welt

ruby script for the track "Diese visuelle Welt" written in Sonic Pi
Ruby
1
star
32

cNetworkDiff

For fast diffusion simulation (or random walks) on networks.
C++
1
star
33

network-properties

Package to easily compute and wrap a bunch of network properties for a given graph
Python
1
star
34

DynGillEpi

Runs Gillespie contagion processes on time dependent contact networks.
C++
1
star
35

3d-fractals

create 3D fractals in blender
Python
1
star
36

fincoretails

Fit a bunch of distributions with finite core and heavy tails to data
Mathematica
1
star
37

GTOM

Computes the general topological overlap measure for undirected and unweighted networks
Python
1
star
38

nwDiff

Simulates diffusion processes on networks.
Python
1
star
39

boarding_school_SIR

Fit SIR dynamics to the prevalence curve of an H1N1 outbreak of a British boarding school in 1978.
Python
1
star
40

network-centrality-visualizations

Some hacky code to visualize centrality measures in networks
Python
1
star
41

BiasedRandomWalks

Provides classes around biased random walks on networks.
Python
1
star
42

networks2021-hons-softwaredemo

Stuff that I showed or wasn't able to show during my talk in the HON satellite of the Networks 2021 conference
Python
1
star
43

LyXTufteThesis

A LyX template for PhD theses at HU Berlin
TeX
1
star