Benjamin F. Maier (@benmaier)
github

benmaier

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Top repositories

1

netwulf

Interactive visualization of networks based on Ulf Aslak's d3 web app.
Python
293
star
2

tacoma

Temporal networks in Python. Provides fast tools to analyze temporal contact networks and simulate dynamic processes on them using Gillespie's SSA.
C++
105
star
3

binpacking

Distribution of weighted items to bins (either a fixed number of bins or a fixed number of volume per bin). Data may be in form of list, dictionary, list of tuples or csv-file.
Python
84
star
4

reaction-diffusion

Some Python examples to obtain reaction-diffusion results and animations.
Jupyter Notebook
83
star
5

epipack

Fast prototyping of epidemiological models based on reaction equations. Analyze the ODEs analytically or numerically, or run stochastic simulations on networks/well-mixed systems.
Python
33
star
6

COVID19CaseNumberModel

Fit the algebraic growth of case numbers in Mainland China with an SIR-containment model
Python
22
star
7

smallworld

Generate and analyze small-world networks according to the revised Watts-Strogatz model where the randomization at β = 1 is truly equal to the Erdős-Rényi network model.
Python
18
star
8

python-fisheye

Transform single points or arrays of points using several fisheye functions.
Python
11
star
9

fisheye

The original fisheye function has a visual flaw due to discontiuities in its first derivative. Here, I present a fisheye function which is continuously differentiable and hence more pleasing to the eye.
JavaScript
8
star
10

qsuite

command line tool to provide an easy framework to submit computer simulations of arbitrary variety in parameter space to various cluster frameworks
Python
7
star
11

couzinswarm

Simulating fish swarming behavior using the model by Iain Couzin et al.
Python
6
star
12

better_understanding

A track made with Sonic Pi
Ruby
6
star
13

phase_space_example

Examples on how to integrate ODE systems with Python and how to plot trajectories in phase space.
Python
6
star
14

GillEpi

Provides classes to simulate epidemics on (potentially time-varying) networks using a Gillespie stochastic simulation algorithm or the classic agent based method.
Python
6
star
15

thresholdmodel

Simulate a continuous-time Watts threshold model on static networks.
Python
6
star
16

ThredgeCorr

Generate instances of the thresholded locally correlated edge weights network model and calculate its properties.
Python
5
star
17

kd-tree-js

A JavaScript implementation of a kd tree that enables fast searches for points within a range as well as nearest neighbors in d dimensions
JavaScript
4
star
18

bfmplot

A collections of snippets and tools to make my plots and my life easier.
Python
3
star
19

pipetex2tex

CLI to convert LaTeX source with piped "\input{|...}" commands into pure LaTeX.
Python
3
star
20

cividis

Register `cividis` with matplotlib, a color map optimized for color vision deficiency, as published in Nuñez, et al. (2018), PLoS ONE 13(7): e0199239 .
Python
3
star
21

komoog

Convert your hiking trips into sounds
Python
2
star
22

drei-fragezeichen-sleeping-beauty

Analyzing whether people use "Die drei ???" to fall asleep using Spotify track popularity data.
Python
2
star
23

cThredgeCorr

For fast generation of edge lists from the thresholded edge correlation model.
Python
2
star
24

CV

My automatically generated CV
JavaScript
2
star
25

similarity-indices

Compute diverse incidence based or abundance based similarity indices between two numpy arrays.
Python
2
star
26

numpyarray_to_latex

Format numpy arrays as LaTeX arrays
Python
2
star
27

cMHRN

Creates modular hierarchical random networks in a fast manner.
C++
2
star
28

radial-distance-layout

Generates a radial layout for trees whose nodes are associated with a distance to the root
Python
2
star
29

effective-distance

provides a few functions to produce an effective distance tree from a given graph and root node
Python
2
star
30

de-omicron-wave-results

Results of a modelling study regarding the spread of SARS-CoV-2 VOC "Omicron" in Germany
1
star
31

cQuadTree

Python API to a C++-implementation of a BarnesHutTree/QuadTree
C++
1
star
32

diese-visuelle-welt

ruby script for the track "Diese visuelle Welt" written in Sonic Pi
Ruby
1
star
33

cNetworkDiff

For fast diffusion simulation (or random walks) on networks.
C++
1
star
34

network-properties

Package to easily compute and wrap a bunch of network properties for a given graph
Python
1
star
35

DynGillEpi

Runs Gillespie contagion processes on time dependent contact networks.
C++
1
star
36

3d-fractals

create 3D fractals in blender
Python
1
star
37

fincoretails

Fit a bunch of distributions with finite core and heavy tails to data
Mathematica
1
star
38

GTOM

Computes the general topological overlap measure for undirected and unweighted networks
Python
1
star
39

nwDiff

Simulates diffusion processes on networks.
Python
1
star
40

boarding_school_SIR

Fit SIR dynamics to the prevalence curve of an H1N1 outbreak of a British boarding school in 1978.
Python
1
star
41

network-centrality-visualizations

Some hacky code to visualize centrality measures in networks
Python
1
star
42

BiasedRandomWalks

Provides classes around biased random walks on networks.
Python
1
star
43

networks2021-hons-softwaredemo

Stuff that I showed or wasn't able to show during my talk in the HON satellite of the Networks 2021 conference
Python
1
star
44

LyXTufteThesis

A LyX template for PhD theses at HU Berlin
TeX
1
star