bartongroup/MG_GlycoTreg bartongroup/MG_GlycoTreg

  • Stars
    star
    1
  • Language
    R
  • License
    MIT License
  • Created over 5 years ago
  • Updated almost 2 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
bartongroup/MG_GlycoTreg
github

bartongroup

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Glycosyltransferases and glycosidases in Treg activation

More Repositories

1

Proteus

R package for analysing proteomics data
R
47
star
2

RATS

Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
R
32
star
3

2passtools

Two pass alignment for long reads
Python
20
star
4

AlmostSignificant

A server for maintaining high-throughput sequencing QC data
Python
13
star
5

yanocomp

Yet another nanopore modification comparison tool
Python
11
star
6

differr_nanopore_DRS

Scripts for identifying sites with differential error rates in mapped nanopore DRS data
Python
10
star
7

profDGE48

Code base for profiling highly replicated differential gene expression RNA-seq.
Perl
10
star
8

Simpson_Barton_Nanopore_1

jupyter notebooks for Parker et al. eLife 2019
Jupyter Notebook
7
star
9

d3pendr

Differential 3' end analysis
Python
3
star
10

ProteoFAV

Open-source framework for simple and fast integration of protein structure data with sequence annotations and genetic variation
Python
3
star
11

LBS-comparison

This is a GitHub Repository containing the data and code used for a thorough comparison of 11 ligand binding site prediction tools
Jupyter Notebook
3
star
12

RoSA

Antisense analysis scripts
Python
2
star
13

aacon

AACon: A Fast Amino Acid Conservation Calculation Service
Java
2
star
14

slivka-bio

Bioinformatics command line tools wrapped as slivka services with customisations for access from Jalview
Python
2
star
15

yanosim

Nanopore DRS read simulator
Python
2
star
16

FM_FunPDBe

Scripts for adding functional annotations to FunPDBe
Python
2
star
17

dexdash

Interactive explorer for differential expression analysis centred on the volcano plot. Features fast functional enrichment.
R
2
star
18

Simpson_Barton_FPA_NLRs

FPA NLR paper pipelines & notebooks
Jupyter Notebook
2
star
19

FRAGSYS

Jupyter Notebook
2
star
20

two_pass_alignment_pipeline

Snakemake pipeline for two pass alignment
Jupyter Notebook
2
star
21

slivka-python-client

Python
2
star
22

SM_VarAlign

Python
2
star
23

SM_Pfam-gnomAD-pipeline

Python
2
star
24

ProIntVar

The core bits of ProIntVar
Python
2
star
25

SM_dundee-resource-templates

This project serves as a template for building web-based bioinformatics tools.
Python
1
star
26

ipr2jalview

Reformats InterPro annotations into a Jalview format feature file
Python
1
star
27

Breast_cancer_over_70

Breast cancer data analysis
R
1
star
28

covid19-ace2-variants

Research code and data to interpret the effect of ACE2 variants on SARS-CoV-2 infection
Jupyter Notebook
1
star
29

KF_arabidopsis-GRNA

The scripts bundle included with the manuscript.
Perl
1
star
30

MG_ProteusPaper

Application note on Proteus
1
star
31

SM_Pfam-gnomAD-statistics

Repository containing notebooks to compute statistics in the paper "A unified approach to evolutionary conservation and population constraint in proteins".
1
star
32

statistics_course

Figures for lectures on statistics
R
1
star
33

Colabfold_batch_installer

Automated colabfold installation for UoD HPC Cluster
Shell
1
star
34

slivka-bio-docker

Docker Compose configuration for slivka-bio
Dockerfile
1
star