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Proteus
R package for analysing proteomics dataRATS
Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.2passtools
Two pass alignment for long readsyanocomp
Yet another nanopore modification comparison tooldifferr_nanopore_DRS
Scripts for identifying sites with differential error rates in mapped nanopore DRS dataprofDGE48
Code base for profiling highly replicated differential gene expression RNA-seq.Simpson_Barton_Nanopore_1
jupyter notebooks for Parker et al. eLife 2019d3pendr
Differential 3' end analysisProteoFAV
Open-source framework for simple and fast integration of protein structure data with sequence annotations and genetic variationLBS-comparison
This is a GitHub Repository containing the data and code used for a thorough comparison of 11 ligand binding site prediction toolsRoSA
Antisense analysis scriptsaacon
AACon: A Fast Amino Acid Conservation Calculation Serviceslivka-bio
Bioinformatics command line tools wrapped as slivka services with customisations for access from Jalviewyanosim
Nanopore DRS read simulatorFM_FunPDBe
Scripts for adding functional annotations to FunPDBedexdash
Interactive explorer for differential expression analysis centred on the volcano plot. Features fast functional enrichment.Simpson_Barton_FPA_NLRs
FPA NLR paper pipelines & notebooksFRAGSYS
two_pass_alignment_pipeline
Snakemake pipeline for two pass alignmentslivka-python-client
SM_VarAlign
SM_Pfam-gnomAD-pipeline
ProIntVar
The core bits of ProIntVarSM_dundee-resource-templates
This project serves as a template for building web-based bioinformatics tools.MG_GlycoTreg
Glycosyltransferases and glycosidases in Treg activationipr2jalview
Reformats InterPro annotations into a Jalview format feature fileBreast_cancer_over_70
Breast cancer data analysiscovid19-ace2-variants
Research code and data to interpret the effect of ACE2 variants on SARS-CoV-2 infectionKF_arabidopsis-GRNA
The scripts bundle included with the manuscript.MG_ProteusPaper
Application note on ProteusSM_Pfam-gnomAD-statistics
Repository containing notebooks to compute statistics in the paper "A unified approach to evolutionary conservation and population constraint in proteins".statistics_course
Figures for lectures on statisticsColabfold_batch_installer
Automated colabfold installation for UoD HPC Clusterslivka-bio-docker
Docker Compose configuration for slivka-bioLove Open Source and this site? Check out how you can help us