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Proteus
R package for analysing proteomics dataRATS
Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.2passtools
Two pass alignment for long readsAlmostSignificant
A server for maintaining high-throughput sequencing QC datayanocomp
Yet another nanopore modification comparison tooldifferr_nanopore_DRS
Scripts for identifying sites with differential error rates in mapped nanopore DRS dataprofDGE48
Code base for profiling highly replicated differential gene expression RNA-seq.Simpson_Barton_Nanopore_1
jupyter notebooks for Parker et al. eLife 2019d3pendr
Differential 3' end analysisProteoFAV
Open-source framework for simple and fast integration of protein structure data with sequence annotations and genetic variationLBS-comparison
This is a GitHub Repository containing the data and code used for a thorough comparison of 11 ligand binding site prediction toolsRoSA
Antisense analysis scriptsaacon
AACon: A Fast Amino Acid Conservation Calculation Serviceslivka-bio
Bioinformatics command line tools wrapped as slivka services with customisations for access from Jalviewyanosim
Nanopore DRS read simulatordexdash
Interactive explorer for differential expression analysis centred on the volcano plot. Features fast functional enrichment.Simpson_Barton_FPA_NLRs
FPA NLR paper pipelines & notebooksFRAGSYS
two_pass_alignment_pipeline
Snakemake pipeline for two pass alignmentslivka-python-client
SM_VarAlign
SM_Pfam-gnomAD-pipeline
ProIntVar
The core bits of ProIntVarSM_dundee-resource-templates
This project serves as a template for building web-based bioinformatics tools.MG_GlycoTreg
Glycosyltransferases and glycosidases in Treg activationipr2jalview
Reformats InterPro annotations into a Jalview format feature fileBreast_cancer_over_70
Breast cancer data analysiscovid19-ace2-variants
Research code and data to interpret the effect of ACE2 variants on SARS-CoV-2 infectionKF_arabidopsis-GRNA
The scripts bundle included with the manuscript.MG_ProteusPaper
Application note on ProteusSM_Pfam-gnomAD-statistics
Repository containing notebooks to compute statistics in the paper "A unified approach to evolutionary conservation and population constraint in proteins".statistics_course
Figures for lectures on statisticsColabfold_batch_installer
Automated colabfold installation for UoD HPC Clusterslivka-bio-docker
Docker Compose configuration for slivka-bioLove Open Source and this site? Check out how you can help us