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RamanSPy
RamanSPy: An open-source Python package for integrative Raman spectroscopy data analysishcga
Highly Comparative Graph Analysis - Code for network phenotypingPyGenStability
PyGenStability: Multiscale community detection with generalized Markov StabilityICE-NODE
Integration of Clinical Embeddings with Neural ODEsDynGDim
Dynamic Graph Dimensionality is a methodology for computing the relative, local and global dimension of complex networks.MultiscaleCentrality
Graph centrality is a question of scale - Multiscale centrality (MSC) is a scale dependent measure of centrality on complex networks.GDR
Graph Diffusion Reclassification - Code from the paper "Semi-supervised classification on graphs using explicit diffusion dynamics" by RL Peach, A Arnaudon and M Barahona, Foundations of Data Science 2 (1), 19-33 (2020)GraphBasedClustering
Multiresolution clustering of data using geometric graphs --- Code from "Graph-based data clustering via multiscale community detection" by Z Liu and M Barahona, Applied Network Science, 5 (3) (2020). See also: https://wwwf.imperial.ac.uk/~mpbara/Partition_Stability/THOR-1
Code for https://arxiv.org/abs/2301.00790POPs
POPs: Propensity Optimised PathsTHOR-2
Code for https://arxiv.org/abs/2303.07925Dynamic-contact-infection-forecast
Dynamic forecasting model using contact patterns to predict disease.severability
Code for the severability component quality functionBayesFactorSimilarity
Code for the paper "Similarity Measure for Sparse Time Course Data Based on Gaussian Processes" by Z Liu and M Barahona, accepted at UAI 2021, https://arxiv.org/abs/2102.12342RMST
dHSIC_ts
Higher order interactions python packagestreitberg-interaction
Repository for 'Interaction Measures, Partition Lattices and Kernel Tests for High-Order Interactions'numerai-thesis
Source code used in thesis for Numerai projectLove Open Source and this site? Check out how you can help us