Barahona Research - Applied Math - Imperial (@barahona-research-group)
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Top repositories

1

RamanSPy

RamanSPy: An open-source Python package for integrative Raman spectroscopy data analysis
Jupyter Notebook
71
star
2

hcga

Highly Comparative Graph Analysis - Code for network phenotyping
Python
43
star
3

PyGenStability

PyGenStability: Multiscale community detection with generalized Markov Stability
C++
32
star
4

ICE-NODE

Integration of Clinical Embeddings with Neural ODEs
Jupyter Notebook
10
star
5

DynGDim

Dynamic Graph Dimensionality is a methodology for computing the relative, local and global dimension of complex networks.
Python
10
star
6

MultiscaleCentrality

Graph centrality is a question of scale - Multiscale centrality (MSC) is a scale dependent measure of centrality on complex networks.
Jupyter Notebook
7
star
7

GDR

Graph Diffusion Reclassification - Code from the paper "Semi-supervised classification on graphs using explicit diffusion dynamics" by RL Peach, A Arnaudon and M Barahona, Foundations of Data Science 2 (1), 19-33 (2020)
Python
5
star
8

GraphBasedClustering

Multiresolution clustering of data using geometric graphs --- Code from "Graph-based data clustering via multiscale community detection" by Z Liu and M Barahona, Applied Network Science, 5 (3) (2020). See also: https://wwwf.imperial.ac.uk/~mpbara/Partition_Stability/
Common Lisp
4
star
9

THOR-1

Code for https://arxiv.org/abs/2301.00790
Python
4
star
10

POPs

POPs: Propensity Optimised Paths
Python
3
star
11

THOR-2

Code for https://arxiv.org/abs/2303.07925
Python
2
star
12

Dynamic-contact-infection-forecast

Dynamic forecasting model using contact patterns to predict disease.
R
2
star
13

MCF

Code for the paper "Persistent Homology of the Multiscale Clustering Filtration" by Dominik J. Schindler and Mauricio Barahona: https://arxiv.org/abs/2305.04281
Python
2
star
14

severability

Code for the severability component quality function
Python
2
star
15

BayesFactorSimilarity

Code for the paper "Similarity Measure for Sparse Time Course Data Based on Gaussian Processes" by Z Liu and M Barahona, accepted at UAI 2021, https://arxiv.org/abs/2102.12342
MATLAB
1
star
16

RMST

Jupyter Notebook
1
star
17

dHSIC_ts

Higher order interactions python package
Python
1
star
18

streitberg-interaction

Repository for 'Interaction Measures, Partition Lattices and Kernel Tests for High-Order Interactions'
Python
1
star
19

numerai-thesis

Source code used in thesis for Numerai project
Python
1
star