barahona-research-group/PyGenStability

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barahona-research-group/PyGenStability

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PyGenStability: Multiscale community detection with generalized Markov Stability

RamanSPy

RamanSPy: An open-source Python package for integrative Raman spectroscopy data analysis

Jupyter Notebook

hcga

Highly Comparative Graph Analysis - Code for network phenotyping

ICE-NODE

Integration of Clinical Embeddings with Neural ODEs

Jupyter Notebook

DynGDim

Dynamic Graph Dimensionality is a methodology for computing the relative, local and global dimension of complex networks.

MultiscaleCentrality

Graph centrality is a question of scale - Multiscale centrality (MSC) is a scale dependent measure of centrality on complex networks.

Jupyter Notebook

GDR

Graph Diffusion Reclassification - Code from the paper "Semi-supervised classification on graphs using explicit diffusion dynamics" by RL Peach, A Arnaudon and M Barahona, Foundations of Data Science 2 (1), 19-33 (2020)

GraphBasedClustering

Multiresolution clustering of data using geometric graphs --- Code from "Graph-based data clustering via multiscale community detection" by Z Liu and M Barahona, Applied Network Science, 5 (3) (2020). See also: https://wwwf.imperial.ac.uk/~mpbara/Partition_Stability/

THOR-1

Code for https://arxiv.org/abs/2301.00790

POPs

POPs: Propensity Optimised Paths

THOR-2

Code for https://arxiv.org/abs/2303.07925

Dynamic-contact-infection-forecast

Dynamic forecasting model using contact patterns to predict disease.

MCF

Code for the paper "Persistent Homology of the Multiscale Clustering Filtration" by Dominik J. Schindler and Mauricio Barahona: https://arxiv.org/abs/2305.04281

severability

Code for the severability component quality function

BayesFactorSimilarity

Code for the paper "Similarity Measure for Sparse Time Course Data Based on Gaussian Processes" by Z Liu and M Barahona, accepted at UAI 2021, https://arxiv.org/abs/2102.12342

RMST

Jupyter Notebook

dHSIC_ts

Higher order interactions python package

streitberg-interaction

Repository for 'Interaction Measures, Partition Lattices and Kernel Tests for High-Order Interactions'

numerai-thesis

Source code used in thesis for Numerai project