SIMEXP/Projects SIMEXP/Projects

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SIMEXP/Projects
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SIMEXP

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Repository Details

Scripts for random projects

More Repositories

1

load_confounds

Load fMRIprep confounds in python
Python
35
star
2

niak

GNU Octave library for connectivity analysis in large fMRI datasets
MATLAB
26
star
3

psom

pipeline system for octave and matlab
MATLAB
23
star
4

fmriprep-denoise-benchmark

Benchmark denoising strategies available from fmriprep.
Python
15
star
5

fmri_predict

predicting fmri activaties from connectome
Jupyter Notebook
15
star
6

fmriprep-slurm

Generate and run SLURM jobs on HPCs
Python
11
star
7

Data2Bids

Reorganize fmri files to make them BIDS compliant.
Python
10
star
8

Repo2Data

Automatic data fetcher from the web
Python
7
star
9

vcog_hps_ad

packages, scripts, and notebooks for paper about cognitive and atrophy signatures in Alzheimer's disease prediction
Jupyter Notebook
6
star
10

tutorials

This repository is intended to give tutorials for the lab, that can be used to learn some usefull tools.
5
star
11

dashQC_fmri

An interactive dashboard for fMRI data quality control
JavaScript
5
star
12

mominc

Matlab/Octave reader/writer for MINC images
MATLAB
5
star
13

deepmotion

correction of motion artefacts in fMRI using deep learning models
Jupyter Notebook
5
star
14

dynamic-states-parcellations

This repository includes the python script to generate dynamic states of parcellation of functional MRI data at the individual level.
Jupyter Notebook
4
star
15

tutorials-basc

A set of tutorials on bootstrap agregation of stable clusters (BASC) for fMRI brain parcellation
Jupyter Notebook
4
star
16

niak_tutorials

Tutorial scripts for NIAK
Jupyter Notebook
3
star
17

fmriprep-qc

Lightweight QC for fMRIPrep outputs
Python
3
star
18

glm_connectome

paper multiscale GLM-connectome
MATLAB
3
star
19

lab-website

a website for the simexp lab
CSS
3
star
20

fmriprep-reproducibility

A datalad repository that contains all materials to check for the stability of the fmriprep LTS version
Jupyter Notebook
3
star
21

multiscale_dashboard

Various visualizations for SIMEXP projects
HTML
2
star
22

mcinet

paper for consistent inter-protocol resting-state functional connectome differences between normal aging and mild cognitive impairment
MATLAB
2
star
23

spm_pipe

MATLAB
1
star
24

deep-neuro-docker

Container for deep learning in neuroscience with jupyter notebook
Dockerfile
1
star
25

brain_match

Code for the paper
Jupyter Notebook
1
star
26

web_niak

niak in a browser
JavaScript
1
star
27

cobre_preprocessed

MATLAB
1
star
28

zooniverse_qc

Jupyter Notebook
1
star
29

bids_conversion

Scripts to convert data from CCNA and CIMAQ
Python
1
star
30

cbrain-plugins-psom

Boutiques JSON descriptors for Niak pipelines.
Ruby
1
star
31

DeepNeuroAN

Deep registration for f-MRI preprocessing.
Jupyter Notebook
1
star
32

wonkyconn

Evaluating the residual motion in fMRI connectome and visualise reports
Python
1
star
33

atlas_dash

Dashboard repo for the multiscale atlas
JavaScript
1
star
34

hpc_schizo

Jupyter Notebook
1
star
35

lab-documentation

SIMEXP-Documentation
Python
1
star
36

rs-autoregression-prediction

Autoregressive model on resting state time series benchmark
Python
1
star
37

giga_auto_qc

Automatic quality control for fMRIPrep outputs aimed for large dataset
Python
1
star
38

NKI_enhanced

Jupyter Notebook
1
star
39

fmriprep-reproducibility-reference

1
star