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@SIMEXP

SIMEXP

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Location 🇨🇦 Canada
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MATLAB
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Jupyter Notebook
308

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Python
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load_confounds

Load fMRIprep confounds in python

niak

GNU Octave library for connectivity analysis in large fMRI datasets

psom

pipeline system for octave and matlab

fmriprep-denoise-benchmark

Benchmark denoising strategies available from fmriprep.

fmri_predict

predicting fmri activaties from connectome

Jupyter Notebook

fmriprep-slurm

Generate and run SLURM jobs on HPCs

Data2Bids

Reorganize fmri files to make them BIDS compliant.

Repo2Data

Automatic data fetcher from the web

vcog_hps_ad

packages, scripts, and notebooks for paper about cognitive and atrophy signatures in Alzheimer's disease prediction

Jupyter Notebook

tutorials

This repository is intended to give tutorials for the lab, that can be used to learn some usefull tools.

dashQC_fmri

An interactive dashboard for fMRI data quality control

mominc

Matlab/Octave reader/writer for MINC images

deepmotion

correction of motion artefacts in fMRI using deep learning models

Jupyter Notebook

dynamic-states-parcellations

This repository includes the python script to generate dynamic states of parcellation of functional MRI data at the individual level.

Jupyter Notebook

tutorials-basc

A set of tutorials on bootstrap agregation of stable clusters (BASC) for fMRI brain parcellation

Jupyter Notebook

niak_tutorials

Tutorial scripts for NIAK

Jupyter Notebook

fmriprep-qc

Lightweight QC for fMRIPrep outputs

glm_connectome

paper multiscale GLM-connectome

lab-website

a website for the simexp lab

fmriprep-reproducibility

A datalad repository that contains all materials to check for the stability of the fmriprep LTS version

Jupyter Notebook

multiscale_dashboard

Various visualizations for SIMEXP projects

mcinet

paper for consistent inter-protocol resting-state functional connectome differences between normal aging and mild cognitive impairment

spm_pipe

deep-neuro-docker

Container for deep learning in neuroscience with jupyter notebook

brain_match

Code for the paper

Jupyter Notebook

web_niak

niak in a browser

cobre_preprocessed

zooniverse_qc

Jupyter Notebook

bids_conversion

Scripts to convert data from CCNA and CIMAQ

cbrain-plugins-psom

Boutiques JSON descriptors for Niak pipelines.

DeepNeuroAN

Deep registration for f-MRI preprocessing.

Jupyter Notebook

wonkyconn

Evaluating the residual motion in fMRI connectome and visualise reports

atlas_dash

Dashboard repo for the multiscale atlas

hpc_schizo

Jupyter Notebook

Projects

Scripts for random projects

Jupyter Notebook

lab-documentation

SIMEXP-Documentation

rs-autoregression-prediction

Autoregressive model on resting state time series benchmark

giga_auto_qc

Automatic quality control for fMRIPrep outputs aimed for large dataset

NKI_enhanced

Jupyter Notebook

fmriprep-reproducibility-reference