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load_confounds
Load fMRIprep confounds in pythonniak
GNU Octave library for connectivity analysis in large fMRI datasetspsom
pipeline system for octave and matlabfmriprep-denoise-benchmark
Benchmark denoising strategies available from fmriprep.fmri_predict
predicting fmri activaties from connectomefmriprep-slurm
Generate and run SLURM jobs on HPCsData2Bids
Reorganize fmri files to make them BIDS compliant.Repo2Data
Automatic data fetcher from the webvcog_hps_ad
packages, scripts, and notebooks for paper about cognitive and atrophy signatures in Alzheimer's disease predictiontutorials
This repository is intended to give tutorials for the lab, that can be used to learn some usefull tools.dashQC_fmri
An interactive dashboard for fMRI data quality controlmominc
Matlab/Octave reader/writer for MINC imagesdeepmotion
correction of motion artefacts in fMRI using deep learning modelsdynamic-states-parcellations
This repository includes the python script to generate dynamic states of parcellation of functional MRI data at the individual level.tutorials-basc
A set of tutorials on bootstrap agregation of stable clusters (BASC) for fMRI brain parcellationniak_tutorials
Tutorial scripts for NIAKfmriprep-qc
Lightweight QC for fMRIPrep outputslab-website
a website for the simexp labfmriprep-reproducibility
A datalad repository that contains all materials to check for the stability of the fmriprep LTS versionmultiscale_dashboard
Various visualizations for SIMEXP projectsmcinet
paper for consistent inter-protocol resting-state functional connectome differences between normal aging and mild cognitive impairmentspm_pipe
deep-neuro-docker
Container for deep learning in neuroscience with jupyter notebookbrain_match
Code for the paperweb_niak
niak in a browsercobre_preprocessed
zooniverse_qc
bids_conversion
Scripts to convert data from CCNA and CIMAQcbrain-plugins-psom
Boutiques JSON descriptors for Niak pipelines.DeepNeuroAN
Deep registration for f-MRI preprocessing.wonkyconn
Evaluating the residual motion in fMRI connectome and visualise reportsatlas_dash
Dashboard repo for the multiscale atlashpc_schizo
Projects
Scripts for random projectslab-documentation
SIMEXP-Documentationrs-autoregression-prediction
Autoregressive model on resting state time series benchmarkgiga_auto_qc
Automatic quality control for fMRIPrep outputs aimed for large datasetNKI_enhanced
fmriprep-reproducibility-reference
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