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load_confounds
Load fMRIprep confounds in pythonniak
GNU Octave library for connectivity analysis in large fMRI datasetspsom
pipeline system for octave and matlabfmriprep-denoise-benchmark
Benchmark denoising strategies available from fmriprep.fmri_predict
predicting fmri activaties from connectomefmriprep-slurm
Generate and run SLURM jobs on HPCsData2Bids
Reorganize fmri files to make them BIDS compliant.Repo2Data
Automatic data fetcher from the webvcog_hps_ad
packages, scripts, and notebooks for paper about cognitive and atrophy signatures in Alzheimer's disease predictiondashQC_fmri
An interactive dashboard for fMRI data quality controlmominc
Matlab/Octave reader/writer for MINC imagesdeepmotion
correction of motion artefacts in fMRI using deep learning modelsdynamic-states-parcellations
This repository includes the python script to generate dynamic states of parcellation of functional MRI data at the individual level.tutorials-basc
A set of tutorials on bootstrap agregation of stable clusters (BASC) for fMRI brain parcellationniak_tutorials
Tutorial scripts for NIAKfmriprep-qc
Lightweight QC for fMRIPrep outputsglm_connectome
paper multiscale GLM-connectomelab-website
a website for the simexp labfmriprep-reproducibility
A datalad repository that contains all materials to check for the stability of the fmriprep LTS versionmultiscale_dashboard
Various visualizations for SIMEXP projectsmcinet
paper for consistent inter-protocol resting-state functional connectome differences between normal aging and mild cognitive impairmentspm_pipe
deep-neuro-docker
Container for deep learning in neuroscience with jupyter notebookbrain_match
Code for the paperweb_niak
niak in a browsercobre_preprocessed
zooniverse_qc
bids_conversion
Scripts to convert data from CCNA and CIMAQcbrain-plugins-psom
Boutiques JSON descriptors for Niak pipelines.DeepNeuroAN
Deep registration for f-MRI preprocessing.wonkyconn
Evaluating the residual motion in fMRI connectome and visualise reportsatlas_dash
Dashboard repo for the multiscale atlashpc_schizo
Projects
Scripts for random projectslab-documentation
SIMEXP-Documentationrs-autoregression-prediction
Autoregressive model on resting state time series benchmarkgiga_auto_qc
Automatic quality control for fMRIPrep outputs aimed for large datasetNKI_enhanced
fmriprep-reproducibility-reference
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