MASILab/MaCRUISE

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Created about 6 years ago
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MASILab/MaCRUISE

MASILab

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3DUX-Net

SLANTbrainSeg

Deep Whole Brain Segmentation Using SLANT Method

SynSeg-Net

SynSeg-Net: Synthetic Segmentation Without Target Modality Ground Truth

Synb0-DISCO

Distortion correction of diffusion weighted MRI without reverse phase-encoding scans or field-maps

PreQual

An automated pipeline for integrated preprocessing and quality assurance of diffusion weighted MRI images

pyPheWAS

MASI Lab Implementation of PheWAS in Python

UNesT

The official Pytorch implementation of UNesT

SynBOLD-DisCo

Synthetic BOLD images for distortion correction of fMRI without additional calibration scans

deform-uxnet

S-EFOV

S-EFOV: Thoracic CT-based Body Composition Analysis with Semantically Extended FOV

tumor-cifar

cornn_tractography

Convolutional-recurrent neural networks approximate diffusion tractography from T1-weighted MRI and associated anatomical context

registration_tutorial

Step by step instructions for body/thorax registration

SSNet

Splenomegaly Segmentation Network

RepUX-Net

ALARM

C-SliceGen

DeepLungIPN

N-GSBSS

Improved Gray Matter Surface based Spatial Statistics (N-GSBSS) in Neuroimaging Studies

QA_tool

Jupyter Notebook

Pandora-WhiteMatterAtlas

DA_CT_muscle_seg

WM_learning_release

lmsignatures

tbi_ct_lesion_segmentation

Jupyter Notebook

coarse_to_fine_prior_seg

mxdrnn_examplecode

This is the example code of the paper MXDRNN

DeepLungScreening

EmphysemaSeg

tractem

Support code for Whole Brain Protocol for Tractography with Empirical MRI (TractEM)

GSBSS

Gray matter Surface Based Spatial Statistics

DCC_CL

lvo-window-adjustment

HARFI_Scripts

HARFI processing

ON_segmentation

Segmentation of the Optic Nerve in MRI

STrUDeL

Streamline Tractography Utilities for Deep Learning

Containerized_DAX

Capstone_WhiteMatterML

Interpretable machine learning approach to identifying white matter brain differences between healthy aging and Alzheimer’s onset through diffusion tensor imaging  

Jupyter Notebook

ComparativeCalibration

Comparative Study of Confidence Calibration

DeepOpenLung

Jupyter Notebook

DeepN4

Jupyter Notebook

AR_Mirror_Muscle_Demo_Clean

Clean muscle demo for the Adventure Science Center (Summer 2019)

spie_2020_mtcsd_dl

This Repository contains the code that was written for the proposition of learning MT-CSD multi-shell FOD reconstruction from single shell DW-MRI

DeepOpenLung_simple

Organ_Surface_Rendering

EigenThorax

Build tools for feature learning in thorax CT space

DAPIArtifactRemoval

AtlasToDiffusionReg

singularity to register an atlas to the diffusion space of a subject

Jupyter Notebook

Augmented-Reality-Programming-Challenge-Walkthrough

For this maker challenge, students explore augmented reality (AR) physiology programs, including muscle and bone overlays and body tracking recording program, using Unity and Microsoft Visual Studio.

ADSP_AutoQA

Automated QA for ADSP processing

SLANTbrainSeg_TICV