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StochHMM
A Hidden Markov Model Application and C++ Library for Rapid and Flexible Development of HMMsSNAP
Gene prediction softwareCEGMA_v2
The final version 2 release of our software to detect core genes in eukaryotic genomesAssemblathon
Code that was used in the Assemblathon 1 and 2 projectsLearnGit
Let's Learn GitPerl_utils
Miscellaneous Perl scripts and modules used by people in the Korf labimeter
2022 reboot of IME projectCentromere_repeat_paper
Code used to generate data for our analysis of centromeric repeatsFRAG_project
To contain code and data files for the Fragmentation project, investigating shattered chromosome phenotypes in Arabidopsis thalianasetup
How to set up your work environmentCEGMA_v3
CEGMA (Core Eukaryotic Genes Mapping Approach), for building a highly reliable set of gene annotations in the absence of experimental data.Rosalind
Solutions to Rosalind problemsgrimoire
Biological sequence analysis toolsdatacore
Standardized protocols and datasets for some model organismsgenomikon
Genomic sequence analysis library & appsunix_and_perl
learning-snakemake
Suecica
Scritps written for research on A. suecica for Luca Comai's labalgorithms
Sickle
genDL
Genomic experiments in Deep LearningGenesmith
Gene finder mixing genomic and protein informationlearning-go
learning-C
Milk-DNase-Seq-Project
Analysis of milk DNase-Seq data in mouse and humandiseasy
DupHMM
An easy to use hidden Markov model-based copy number variant identifierlyman2020
Custom scripts for Lyman et al (2020)ago
julie
Bioinformatics experiments with Julialearning-conda
IME
A new code base for the IME project.korflab.github.io
Ploidamatic
StochHMM-based decoder for detecting copy number from alignmentsgrimoire2
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