KorfLab/unix_and_perl KorfLab/unix_and_perl

  • Stars
    star
    2
  • Language
    HTML
  • Created almost 4 years ago
  • Updated almost 4 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
KorfLab/unix_and_perl
github

KorfLab

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

More Repositories

1

StochHMM

A Hidden Markov Model Application and C++ Library for Rapid and Flexible Development of HMMs
C++
148
star
2

SNAP

Gene prediction software
C
59
star
3

CEGMA_v2

The final version 2 release of our software to detect core genes in eukaryotic genomes
Perl
27
star
4

Assemblathon

Code that was used in the Assemblathon 1 and 2 projects
Perl
6
star
5

LearnGit

Let's Learn Git
Perl
6
star
6

Perl_utils

Miscellaneous Perl scripts and modules used by people in the Korf lab
Perl
4
star
7

imeter

2022 reboot of IME project
Python
3
star
8

Centromere_repeat_paper

Code used to generate data for our analysis of centromeric repeats
Perl
3
star
9

FRAG_project

To contain code and data files for the Fragmentation project, investigating shattered chromosome phenotypes in Arabidopsis thaliana
Perl
3
star
10

setup

How to set up your work environment
Python
3
star
11

CEGMA_v3

CEGMA (Core Eukaryotic Genes Mapping Approach), for building a highly reliable set of gene annotations in the absence of experimental data.
3
star
12

Rosalind

Solutions to Rosalind problems
Perl
3
star
13

grimoire

Biological sequence analysis tools
Python
3
star
14

datacore

Standardized protocols and datasets for some model organisms
Python
3
star
15

genomikon

Genomic sequence analysis library & apps
C
2
star
16

spitfire

2
star
17

learning-snakemake

Python
2
star
18

Suecica

Scritps written for research on A. suecica for Luca Comai's lab
Python
2
star
19

algorithms

Python
2
star
20

Sickle

1
star
21

genDL

Genomic experiments in Deep Learning
Jupyter Notebook
1
star
22

Genesmith

Gene finder mixing genomic and protein information
Perl
1
star
23

learning-go

1
star
24

learning-C

C
1
star
25

Milk-DNase-Seq-Project

Analysis of milk DNase-Seq data in mouse and human
Perl
1
star
26

diseasy

HTML
1
star
27

DupHMM

An easy to use hidden Markov model-based copy number variant identifier
Python
1
star
28

lyman2020

Custom scripts for Lyman et al (2020)
Python
1
star
29

ago

Go
1
star
30

julie

Bioinformatics experiments with Julia
Julia
1
star
31

learning-conda

1
star
32

IME

A new code base for the IME project.
Perl
1
star
33

korflab.github.io

1
star
34

Ploidamatic

StochHMM-based decoder for detecting copy number from alignments
Perl
1
star
35

grimoire2

Go
1
star