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StochHMM
A Hidden Markov Model Application and C++ Library for Rapid and Flexible Development of HMMsSNAP
Gene prediction softwareCEGMA_v2
The final version 2 release of our software to detect core genes in eukaryotic genomesAssemblathon
Code that was used in the Assemblathon 1 and 2 projectsLearnGit
Let's Learn GitPerl_utils
Miscellaneous Perl scripts and modules used by people in the Korf labimeter
2022 reboot of IME projectCentromere_repeat_paper
Code used to generate data for our analysis of centromeric repeatsFRAG_project
To contain code and data files for the Fragmentation project, investigating shattered chromosome phenotypes in Arabidopsis thalianasetup
How to set up your work environmentCEGMA_v3
CEGMA (Core Eukaryotic Genes Mapping Approach), for building a highly reliable set of gene annotations in the absence of experimental data.grimoire
Biological sequence analysis toolsdatacore
Standardized protocols and datasets for some model organismsgenomikon
Genomic sequence analysis library & appsunix_and_perl
spitfire
learning-snakemake
Suecica
Scritps written for research on A. suecica for Luca Comai's labalgorithms
Sickle
genDL
Genomic experiments in Deep LearningGenesmith
Gene finder mixing genomic and protein informationlearning-go
learning-C
Milk-DNase-Seq-Project
Analysis of milk DNase-Seq data in mouse and humandiseasy
DupHMM
An easy to use hidden Markov model-based copy number variant identifierlyman2020
Custom scripts for Lyman et al (2020)ago
julie
Bioinformatics experiments with Julialearning-conda
IME
A new code base for the IME project.korflab.github.io
Ploidamatic
StochHMM-based decoder for detecting copy number from alignmentsgrimoire2
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