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neural-odes-segmentation
Neural Ordinary Differential Equations for Semantic Segmentation of Individual Colon GlandsStreamingCNN
To train deep convolutional neural networks, the input data and the activations need to be kept in memory. Given the limited memory available in current GPUs, this limits the maximum dimensions of the input data. Here we demonstrate a method to train convolutional neural networks while holding only parts of the image in memory.pathology-whole-slide-data
A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.pathology-streaming-pipeline
Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.pathology-he-auto-augment
H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.pathology-hooknet
picai_labels
Annotations for the PI-CAI Challenge: Public Training and Development Datasetpicai_baseline
Baseline AI models for 3D csPCa detection/diagnosis in bpMRIprostateMR_3D-CAD-csPCa
Hierarchical probabilistic 3D U-Net, with attention mechanisms (โ๐๐ต๐ต๐ฆ๐ฏ๐ต๐ช๐ฐ๐ฏ ๐-๐๐ฆ๐ต, ๐๐๐๐ฆ๐ด๐๐ฆ๐ต) and a nested decoder structure with deep supervision (โ๐๐๐ฆ๐ต++). Built in TensorFlow 2.5. Configured for voxel-level clinically significant prostate cancer detection in multi-channel 3D bpMRI scans.HoVer-UNet
pathology-artifact-detection
Quality control of whole-slide images through multi-class semantic segmentation of artifactsULS23
Repository for the Universal Lesion Segmentation Challenge '23picai_prep
Preprocessing 3D medical images and image archives โgeared towards prostate cancer detection in MRI.picai_eval
Evaluation of 3D detection and diagnosis performance โgeared towards prostate cancer detection in MRI.Report-Guided-Annotation
Report Guided Annotationspgnn
Structure and position aware graph neural network for airway labelingopencxr
A collection of open-source algorithms for chest X-ray analysisrse-panimg
Conversion of medical images to MHA and TIFF.AbdomenMRUS-prostate-segmentation
Grand Challenge wrapper for whole-gland prostate segmentation with nnUNetSPIDER-Baseline-IIS
panda-challenge
Code related to the PANDA challenge on artificial intelligence for Gleason gradingpathology-hooknet-tls
pathology-tiger-algorithm-example
Example algorithm and docker for the TIGER challengepathology-tiger-baseline
panorama_labels
drive-vessels-unet
pathology-whole-slide-packer
extracts tissue sections from one or multiple whole slide images and combines them into a single new slide removing excess white spacewebsite-content
This repository stores all the content for the diag websites.covid19-imaging-ai
An organized collection of data, software, initiatives and papers for COVID-19 imaging AIpathology-he-autoaugmetation
Comparative analysis of 4 state-of-the-art automatic augmentation algorithms in H&E stained histopathology.MedicalTransferLearning3D-UNet
This repository contains the model used for the paper ''Transfer learning from a sparsely annotated dataset of 3D medical images'' by G. Humpire, C. Jacobs, M. Prokop, B. van Ginneken, N. Lessmann.prostateMR-USSL
Uncertainty Aware Self-Supervised Prostate Zonal Segmentation in 3D MRI scans using Probabilistic Attention U-Net..picai_nnunet_gc_algorithm
nnUNet model for 3D csPCa detection/diagnosis in bpMRI, deployable on grand-challenge.orgpicai_nndetection_semi_supervised_gc_algorithm
Semi-supervised nnDetection model for 3D csPCa detection/diagnosis in bpMRI, deployable on grand-challenge.orgAbdomenMRUS-csPCa-CAD-nnUNet
Clinically Significant Prostate Cancer Detection in bpMRI using models trained with Report Guided Annotationspathology-streamingclam
Lightstream implementation of the StreamingCLAM modelPANORAMA_baseline
picai_unet_semi_supervised_gc_algorithm
Semi-supervised UNet model for 3D csPCa detection/diagnosis in bpMRI, deployable on grand-challenge.orgbodyct-dsb2017-grt123
Repository which contains the code of the grt123 solution from the Kaggle DSB 2017 challenge on lung cancer detectionpicai_unet_gc_algorithm
U-Net model for 3D csPCa detection/diagnosis in bpMRI, deployable on grand-challenge.orgpicai_nnunet_semi_supervised_gc_algorithm
Semi-supervised nnUNet model for 3D csPCa detection/diagnosis in bpMRI, deployable on grand-challenge.orgadhesion_detection
Adhesion detection on cine MRIrse-gcapi
Python client for the grand-challenge.org APIflare22-brananas
Codebase of team brananas for the FLARE22 challengepicai_nndetection_gc_algorithm
nnDetection model for 3D csPCa detection/diagnosis in bpMRI, deployable on grand-challenge.orgACOUSLIC-AI-baseline
ACOUSLIC-AI-evaluation-method
SPIDER-Evaluation
Evaluation code used for the SPIDER Challenge.bodyct-luna22-ismi-training-baseline
Baseline repo for LUNA22-ismi challengestoic2021-finalphase-submission-hal9000
stoic2021-finalphase-submission-code1055
bodyct-dram
node21-noduledetection
Template for nodule detection algorithm for node21 challengefrodo
library for FRODOnode21
rse-pyswot
Python implementation of JetBrains/swotLEOPARD-challenge-baseline
rse-sagemaker-shim
Adapts algorithms that implement the Grand Challenge inference API for running in SageMakerCE-CT_PDAC_AutomaticDetection_nnUnet
Fully automtic pipeline for pancreatic ductal adenocarcinoma (PDAC) detection on contrast enhanced computed tomography (CE-CT) scansauc23-t2-algorithm-container-rib-ct-fracture
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