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IntaRNA
Efficient target prediction incorporating accessibility of interaction sitesRNA-Playground
Visualize the inner workings of RNA bioinformatics algorithms for structure prediction, interaction prediction and sequence alignment.GGL
Graph Grammar LibraryCRISPRidentify
CRISPRcasIdentifier
Machine learning for accurate identification and classification of CRISPR-Cas systemsGraphClust-2
A pipeline for structural clustering of RNA secondary structuresCRISPRloci
GraphProt2
Modelling RBP binding preferences to predict RPB binding sitesRNAProt
Modelling RBP binding preferences to predict RPB binding sitesAlgoDat
Algorithm & Data structuresShaKer
SHApe simulation with graph KERnelsCRISPRtracrRNA
mechRNA
CAM
Constraint-based Atom-Atom MappingSalamiSnake
Snakemake Piepline for CLIP dataDeepAcr
StoatyDive
AxoWise
An integrated graph system of biological entities, functional terms, and publications.Peakhood
Individual site context extraction for CLIP-Seq peak regionsCRISPRleader
CRISPRleader takes a complete genome or draft genome as input and selects all possible CRISPR arrays in the correct orientation, and annotates the CRISPR leader boundaries.IntaRNA-benchmark
Data and scripts to benchmark IntaRNACasboundary
Automated definition of integral CRISPR/Cas cassettes.GraphClust
Structural clustering of local RNA secondary structureslocal_alignment
GeneralizedCoarseGraining
Generalized Coarse Graining (GCG) enables the recursive coarse graining of discrete energy landscapesIntaRNA-benchmark-SHAPE
This repository contains data and analysis scripts for IntARNA's structure probing (SHAPE) extensionRBPBench
AlgorithmAndDatastructures-Material
Slides for Algorithms and Datastructure lecture for IEMS/ESELatPack
Collection of tools related to modelling and folding simulations of lattice-protein models with arbitrary energy functionsdocker-galaxy-clip
Docker image with fully functional Galaxy server with tools for CLIP analysesAccessory.Crispr
Comprehensive search for accessory proteins encoded with archaeal and bacterial Type III CRISPR-Cas gene cassettes reveals 39 new cas gene familiesCourse_Algorithms_in_Bioinformatics
Interfaces and materials for the programming course "Algorithms in Bioinformatics"Love Open Source and this site? Check out how you can help us