BackofenLab/CRISPRcasIdentifier BackofenLab/CRISPRcasIdentifier

  • Stars
    star
    20
  • Rank 1,121,974 (Top 23 %)
  • Language
    Python
  • License
    GNU General Publi...
  • Created almost 5 years ago
  • Updated about 4 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
BackofenLab/CRISPRcasIdentifier
github

BackofenLab

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Machine learning for accurate identification and classification of CRISPR-Cas systems

More Repositories

1

IntaRNA

Efficient target prediction incorporating accessibility of interaction sites
C++
44
star
2

RNA-Playground

Visualize the inner workings of RNA bioinformatics algorithms for structure prediction, interaction prediction and sequence alignment.
JavaScript
34
star
3

GGL

Graph Grammar Library
C++
23
star
4

CRISPRidentify

Python
20
star
5

GraphClust-2

A pipeline for structural clustering of RNA secondary structures
Python
14
star
6

CRISPRloci

Python
13
star
7

GraphProt2

Modelling RBP binding preferences to predict RPB binding sites
Python
10
star
8

RNAProt

Modelling RBP binding preferences to predict RPB binding sites
Python
9
star
9

AlgoDat

Algorithm & Data structures
TeX
8
star
10

ShaKer

SHApe simulation with graph KERnels
Jupyter Notebook
8
star
11

CRISPRtracrRNA

C
6
star
12

mechRNA

Python
5
star
13

CAM

Constraint-based Atom-Atom Mapping
C++
4
star
14

SalamiSnake

Snakemake Piepline for CLIP data
Python
4
star
15

DeepAcr

Python
4
star
16

StoatyDive

Python
3
star
17

AxoWise

An integrated graph system of biological entities, functional terms, and publications.
Vue
3
star
18

Peakhood

Individual site context extraction for CLIP-Seq peak regions
Python
3
star
19

MICA

Multiple Interval-based Curve Alignment
Java
3
star
20

CRISPRleader

CRISPRleader takes a complete genome or draft genome as input and selects all possible CRISPR arrays in the correct orientation, and annotates the CRISPR leader boundaries.
Perl
3
star
21

IntaRNA-benchmark

Data and scripts to benchmark IntaRNA
Python
2
star
22

Casboundary

Automated definition of integral CRISPR/Cas cassettes.
Python
2
star
23

GraphClust

Structural clustering of local RNA secondary structures
Perl
2
star
24

local_alignment

Jupyter Notebook
2
star
25

GeneralizedCoarseGraining

Generalized Coarse Graining (GCG) enables the recursive coarse graining of discrete energy landscapes
Perl
2
star
26

IntaRNA-benchmark-SHAPE

This repository contains data and analysis scripts for IntARNA's structure probing (SHAPE) extension
Jupyter Notebook
2
star
27

RBPBench

Python
1
star
28

AlgorithmAndDatastructures-Material

Slides for Algorithms and Datastructure lecture for IEMS/ESE
1
star
29

LatPack

Collection of tools related to modelling and folding simulations of lattice-protein models with arbitrary energy functions
C++
1
star
30

docker-galaxy-clip

Docker image with fully functional Galaxy server with tools for CLIP analyses
HTML
1
star
31

Accessory.Crispr

Comprehensive search for accessory proteins encoded with archaeal and bacterial Type III CRISPR-Cas gene cassettes reveals 39 new cas gene families
HTML
1
star
32

Course_Algorithms_in_Bioinformatics

Interfaces and materials for the programming course "Algorithms in Bioinformatics"
Jupyter Notebook
1
star