• Stars
    star
    1
  • Language
    C++
  • License
    MIT License
  • Created over 1 year ago
  • Updated 10 months ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Collection of tools related to modelling and folding simulations of lattice-protein models with arbitrary energy functions

More Repositories

1

IntaRNA

Efficient target prediction incorporating accessibility of interaction sites
C++
44
star
2

RNA-Playground

Visualize the inner workings of RNA bioinformatics algorithms for structure prediction, interaction prediction and sequence alignment.
JavaScript
34
star
3

GGL

Graph Grammar Library
C++
23
star
4

CRISPRidentify

Python
20
star
5

CRISPRcasIdentifier

Machine learning for accurate identification and classification of CRISPR-Cas systems
Python
20
star
6

GraphClust-2

A pipeline for structural clustering of RNA secondary structures
Python
14
star
7

CRISPRloci

Python
13
star
8

GraphProt2

Modelling RBP binding preferences to predict RPB binding sites
Python
10
star
9

RNAProt

Modelling RBP binding preferences to predict RPB binding sites
Python
9
star
10

AlgoDat

Algorithm & Data structures
TeX
8
star
11

ShaKer

SHApe simulation with graph KERnels
Jupyter Notebook
8
star
12

CRISPRtracrRNA

C
6
star
13

mechRNA

Python
5
star
14

CAM

Constraint-based Atom-Atom Mapping
C++
4
star
15

SalamiSnake

Snakemake Piepline for CLIP data
Python
4
star
16

DeepAcr

Python
4
star
17

StoatyDive

Python
3
star
18

AxoWise

An integrated graph system of biological entities, functional terms, and publications.
Vue
3
star
19

Peakhood

Individual site context extraction for CLIP-Seq peak regions
Python
3
star
20

MICA

Multiple Interval-based Curve Alignment
Java
3
star
21

CRISPRleader

CRISPRleader takes a complete genome or draft genome as input and selects all possible CRISPR arrays in the correct orientation, and annotates the CRISPR leader boundaries.
Perl
3
star
22

IntaRNA-benchmark

Data and scripts to benchmark IntaRNA
Python
2
star
23

Casboundary

Automated definition of integral CRISPR/Cas cassettes.
Python
2
star
24

GraphClust

Structural clustering of local RNA secondary structures
Perl
2
star
25

local_alignment

Jupyter Notebook
2
star
26

GeneralizedCoarseGraining

Generalized Coarse Graining (GCG) enables the recursive coarse graining of discrete energy landscapes
Perl
2
star
27

IntaRNA-benchmark-SHAPE

This repository contains data and analysis scripts for IntARNA's structure probing (SHAPE) extension
Jupyter Notebook
2
star
28

RBPBench

Python
1
star
29

AlgorithmAndDatastructures-Material

Slides for Algorithms and Datastructure lecture for IEMS/ESE
1
star
30

docker-galaxy-clip

Docker image with fully functional Galaxy server with tools for CLIP analyses
HTML
1
star
31

Accessory.Crispr

Comprehensive search for accessory proteins encoded with archaeal and bacterial Type III CRISPR-Cas gene cassettes reveals 39 new cas gene families
HTML
1
star
32

Course_Algorithms_in_Bioinformatics

Interfaces and materials for the programming course "Algorithms in Bioinformatics"
Jupyter Notebook
1
star