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Top repositories

1

PyDESeq2

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
Python
569
star
2

FLamby

Cross-silo Federated Learning playground in Python. Discover 7 real-world federated datasets to test your new FL strategies and try to beat the leaderboard.
Python
199
star
3

HistoSSLscaling

Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., MedRxiv (2023). We publicly release Phikon 🚀
Jupyter Notebook
140
star
4

HE2RNA_code

Train a model to predict gene expression from histology slides.
Python
90
star
5

GrAIdient

GrAIdient is a deep learning framework that aims at challenging the way we train and run models.
Swift
82
star
6

DSB2017

Data Science Bowl 2017 : Lung Cancer Detection
Python
44
star
7

grad-cnns

Code and manuscript for "Efficient Per-Example Gradient Computations in Convolutional Neural Networks"
TeX
29
star
8

charts

Helm charts maintained by Owkin
Mustache
18
star
9

scancovia

Python
8
star
10

idash-2020

iDASH 2020 - Owkin submission
7
star
11

fedeca

Code repository associated with the FedECA article
Python
7
star
12

SRATTA

Implementation of the SRATTA paper
Python
4
star
13

benchmark_flamby

This is an example to showcase how one can use benchopt in combination with FLamby in order to be able to create and share reproducible reports about performance of new FL strategies.
Python
4
star
14

hte

Python
3
star
15

EUCAIM_Substra_demo

Substra demo for EUCAIM project
Python
2
star
16

drl-evaluation

Robust evaluation of DRL methods for survival and gene essentiality prediction on bulk RNAseq
Python
2
star
17

CovadjustSim

Simulation Studies of the effect of covariate adjustment on the statistical power of treatment effect estimation in a clinical tiral
R
2
star
18

docker-dependency-updater

Checks system dependencies and update them if required
TypeScript
1
star