owkin/HE2RNA_code

This repository has been archived on 15/Feb/2023
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owkin/HE2RNA_code

owkin

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Train a model to predict gene expression from histology slides.

PyDESeq2

A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

FLamby

Cross-silo Federated Learning playground in Python. Discover 7 real-world federated datasets to test your new FL strategies and try to beat the leaderboard.

HistoSSLscaling

Code associated to the publication: Scaling self-supervised learning for histopathology with masked image modeling, A. Filiot et al., MedRxiv (2023). We publicly release Phikon 🚀

Jupyter Notebook

GrAIdient

GrAIdient is a deep learning framework that aims at challenging the way we train and run models.

DSB2017

Data Science Bowl 2017 : Lung Cancer Detection

grad-cnns

Code and manuscript for "Efficient Per-Example Gradient Computations in Convolutional Neural Networks"

charts

Helm charts maintained by Owkin

scancovia

idash-2020

iDASH 2020 - Owkin submission

fedeca

Code repository associated with the FedECA article

SRATTA

Implementation of the SRATTA paper

benchmark_flamby

This is an example to showcase how one can use benchopt in combination with FLamby in order to be able to create and share reproducible reports about performance of new FL strategies.

hte

EUCAIM_Substra_demo

Substra demo for EUCAIM project

drl-evaluation

Robust evaluation of DRL methods for survival and gene essentiality prediction on bulk RNAseq

CovadjustSim

Simulation Studies of the effect of covariate adjustment on the statistical power of treatment effect estimation in a clinical tiral

docker-dependency-updater

Checks system dependencies and update them if required