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H3ABioNet (@h3abionet)

h3abionet

Stars
224
Global Org. Rank 37,475 (Top 12 %)
Registered about 11 years ago
Most used languages

Nextflow 45.5 %

Shell
9.1 %

HTML
9.1 %

JavaScript
9.1 %

Common Workflow Language 9.1 %

Makefile 4.5 %

Python
4.5 %

Dockerfile
4.5 %

C++
4.5 %
Location 🇿🇦 South Africa
Country Total Rank 153
Country Ranking

Common Workflow Language 1

Nextflow 1

Dockerfile
13

Makefile 17

HTML
62

C++
71

Shell
71

Python
648

JavaScript
718

h3agwas

GWAS Pipeline for H3Africa

h3agatk

Common Workflow Language

TADA

TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region

chipimputation

Genotype Imputation Pipeline for H3Africa

h3abionet16S

H3ABioNet 16S rDNA diverstity analysis package

Common Workflow Language

H3ABionet-SOPs

Standard operating procedures for H3ABionet data processing and analyses

h3agwas-examples

h3avarcall

H3A variant calling pipeline

h3agwas-docker

h3ameta

H3ABioNet Metagenomics Workflow

recalling

Scripts for recalling several available datasets. The final output will be used by different H3A projects, e.g. ADME, refpanel. An improved fork of this repos is here: https://github.com/grbot/varcall

h3aphenstds

african_microbiome_portal

h3arefgraph

H3A RefGraph Hackathon 2019

cvd

Phenotype harmonization pipeline

RefGraph_denovo_building

refimpute_panels

Nextflow pipelines for building H3A refpanels

dec-2020-hackathon-stream1

h3agwas-sample-data

Sample h3agwas data

vcfreport

Produces stats on a vcf panel

popfreqs

afpo

AfPO: African Population Ontology

african_genomics_medicine_portal

This is the African Genomic Medicine Portal that provides information about African genomics and variation with regards to pharmocology and disease. AGMP

h3africa-chip

Scripts related to the design of the H3Africa chip