Discover h3abionet/african_genomics_medicine

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h3abionet

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This is the African Genomic Medicine Portal that provides information about African genomics and variation with regards to pharmocology and disease. AGMP

h3agwas

GWAS Pipeline for H3Africa

Nextflow

h3agatk

Common Workflow Language

TADA

TADA - Targeted Amplicon Diversity Analysis - a DADA2-focused Nextflow workflow for any targeted amplicon region

Nextflow

chipimputation

Genotype Imputation Pipeline for H3Africa

Nextflow

h3abionet16S

H3ABioNet 16S rDNA diverstity analysis package

Common Workflow Language

H3ABionet-SOPs

Standard operating procedures for H3ABionet data processing and analyses

HTML

h3agwas-examples

C++

h3avarcall

H3A variant calling pipeline

Shell

h3agwas-docker

Dockerfile

h3ameta

H3ABioNet Metagenomics Workflow

HTML

recalling

Scripts for recalling several available datasets. The final output will be used by different H3A projects, e.g. ADME, refpanel. An improved fork of this repos is here: https://github.com/grbot/varcall

Nextflow

h3aphenstds

african_microbiome_portal

JavaScript

h3arefgraph

H3A RefGraph Hackathon 2019

Nextflow

cvd

Phenotype harmonization pipeline

Python

RefGraph_denovo_building

Nextflow

refimpute_panels

Nextflow pipelines for building H3A refpanels

Nextflow

dec-2020-hackathon-stream1

Nextflow

h3agwas-sample-data

Sample h3agwas data

vcfreport

Produces stats on a vcf panel

Nextflow

popfreqs

Nextflow

afpo

AfPO: African Population Ontology

Makefile

h3africa-chip

Shell

h3abionet/african_genomics_medicine_portal

h3abionet

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