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Brinkman Lab - Simon Fraser University (@brinkmanlab)

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islandpath

IslandPath standalone software

IslandCompare

Pipeline for detecting and annotating genomic islands and relationships between the respective genomes

islandcompare-cli

IslandCompare Command Line Interface

psortb_commandline_docker

PSORTb command-line docker - Dockerfile and "docker run" wrapper

BioPython-Convert

Tool to interconvert between various bioinformatics formats that BioPython supports

psortm_commandline_docker

Docker build file and wrapper script to run psortm inside the container

galaxy-tools

Central repo for all brinkman maintained Galaxy Tools

psortm-docker

psortm-docker public repository

MicrobeDB

Curated mirror of RefSeq Microbial Genomes. Available via CVMFS repository.

irida-container

Deploy IRIDA locally using docker or to a major Cloud provider

curated_GIs

Curated database of labelled Genomic Islands found in publications