AntigenOmics (@antigenomics)
Guthub

antigenomics

Twitter logo Share LinkedIn logo Share Facebook logo Share

Top repositories

1

vdjdb-db

πŸ—‚οΈ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!
Groovy
131
star
2

vdjmatch

βš™οΈ Matching T-cell repertoire against a database of TCR antigen specificities
Groovy
36
star
3

vdjviz

βš™οΈ A lightweight immune repertoire browser
JavaScript
27
star
4

vdjdb-web

Interactive browser for the VDJdb database
HTML
14
star
5

tcr-annotation-methodology

πŸ“ [Paper/Tutorial] T-cell repertoire annotation and motif discovery
TeX
13
star
6

tcren-ms

πŸ“ [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential
Parrot
12
star
7

repseq-annotation-tutorial

πŸ“ [Tutorial] RepSeq data mining basics in R
TeX
10
star
8

repseq-protocol-comparison

πŸ“ [Paper] Comparative analysis of immune repertoire profiling protocols
R
6
star
9

vdjdb-motifs

βš™οΈ Motif inference for the VDJdb database
R
5
star
10

vdjdb-classifier-benchmark

Jupyter Notebook
5
star
11

tcr-pmhc-study

Mining TCR:pMHC structural data
Python
5
star
12

ipred

Antigen immunogenicity prediction
Jupyter Notebook
5
star
13

segment-parser

A parser for immune receptor gene data, mainly IMGT references
Groovy
3
star
14

vdjsight

[under development] Next-generation immunome browser
TypeScript
3
star
15

trab-pairing-study

πŸ“ [Paper] Studying pairing preferences between TCR alpha and beta chains
2
star
16

vdjstruct

[DEPRECATED]
HTML
2
star
17

vdjdb-server

[MOVED/DEPRECATED] See vdjdb-web repository for latest version
HTML
2
star
18

covid19-tcr-analysis

Identification and analysis of TCR motifs specific to SARS-CoV-2 epitopes
HTML
2
star
19

public-epitope

πŸ“ [Paper] Exploring the landscape of specific TCR precursor frequencies
1
star
20

pyigmap

A smart wrapper for V(D)J mapping software
Python
1
star
21

biohack-2018

Data & analysis for biohack-2018 project
Jupyter Notebook
1
star
22

tcr-thymic-selection

Network properties of public TCRs
Jupyter Notebook
1
star
23

bootcamp

Pre-employment assessments
1
star
24

ilrfilter

Immunoglobulin-like Read Filter
Java
1
star
25

tcr-cdr-loop-model

[DEPRECATED]
Jupyter Notebook
1
star
26

mist

[DEPRECATED]
Java
1
star
27

bioinf-cov-classifier

Classifying the status of COVID samples and SARS-CoV2-specific TCRs
Jupyter Notebook
1
star