antigenomics/covid19-tcr-analysis antigenomics/covid19-tcr-analysis

  • Stars
    star
    2
  • Language
    HTML
  • Created about 4 years ago
  • Updated about 4 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
antigenomics/covid19-tcr-analysis
github

antigenomics

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Identification and analysis of TCR motifs specific to SARS-CoV-2 epitopes

More Repositories

1

vdjdb-db

🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!
Groovy
127
star
2

vdjmatch

⚙️ Matching T-cell repertoire against a database of TCR antigen specificities
Groovy
36
star
3

vdjviz

⚙️ A lightweight immune repertoire browser
JavaScript
27
star
4

vdjdb-web

Interactive browser for the VDJdb database
HTML
14
star
5

tcr-annotation-methodology

📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery
TeX
13
star
6

repseq-annotation-tutorial

📝 [Tutorial] RepSeq data mining basics in R
TeX
9
star
7

tcren-ms

📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential
Parrot
7
star
8

repseq-protocol-comparison

📝 [Paper] Comparative analysis of immune repertoire profiling protocols
R
6
star
9

vdjdb-motifs

⚙️ Motif inference for the VDJdb database
R
5
star
10

vdjdb-classifier-benchmark

Jupyter Notebook
5
star
11

tcr-pmhc-study

Mining TCR:pMHC structural data
Python
5
star
12

ipred

Antigen immunogenicity prediction
Jupyter Notebook
4
star
13

segment-parser

A parser for immune receptor gene data, mainly IMGT references
Groovy
3
star
14

vdjsight

[under development] Next-generation immunome browser
TypeScript
3
star
15

trab-pairing-study

📝 [Paper] Studying pairing preferences between TCR alpha and beta chains
2
star
16

vdjstruct

[DEPRECATED]
HTML
2
star
17

vdjdb-server

[MOVED/DEPRECATED] See vdjdb-web repository for latest version
HTML
2
star
18

public-epitope

📝 [Paper] Exploring the landscape of specific TCR precursor frequencies
1
star
19

pyigmap

A smart wrapper for V(D)J mapping software
Python
1
star
20

biohack-2018

Data & analysis for biohack-2018 project
Jupyter Notebook
1
star
21

bootcamp

Pre-employment assessments
1
star
22

ilrfilter

Immunoglobulin-like Read Filter
Java
1
star
23

tcr-cdr-loop-model

[DEPRECATED]
Jupyter Notebook
1
star
24

mist

[DEPRECATED]
Java
1
star
25

bioinf-cov-classifier

Classifying the status of COVID samples and SARS-CoV2-specific TCRs
Jupyter Notebook
1
star