antigenomics/public-epitope

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antigenomics/public-epitope

antigenomics

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📝 [Paper] Exploring the landscape of specific TCR precursor frequencies

vdjdb-db

🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!

vdjmatch

⚙️ Matching T-cell repertoire against a database of TCR antigen specificities

vdjviz

⚙️ A lightweight immune repertoire browser

vdjdb-web

Interactive browser for the VDJdb database

tcr-annotation-methodology

📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery

repseq-annotation-tutorial

📝 [Tutorial] RepSeq data mining basics in R

tcren-ms

📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential

repseq-protocol-comparison

📝 [Paper] Comparative analysis of immune repertoire profiling protocols

vdjdb-motifs

⚙️ Motif inference for the VDJdb database

vdjdb-classifier-benchmark

Jupyter Notebook

tcr-pmhc-study

Mining TCR:pMHC structural data

ipred

Antigen immunogenicity prediction

Jupyter Notebook

segment-parser

A parser for immune receptor gene data, mainly IMGT references

vdjsight

[under development] Next-generation immunome browser

trab-pairing-study

📝 [Paper] Studying pairing preferences between TCR alpha and beta chains

vdjstruct

vdjdb-server

[MOVED/DEPRECATED] See vdjdb-web repository for latest version

covid19-tcr-analysis

Identification and analysis of TCR motifs specific to SARS-CoV-2 epitopes

pyigmap

A smart wrapper for V(D)J mapping software

biohack-2018

Data & analysis for biohack-2018 project

Jupyter Notebook

bootcamp

Pre-employment assessments

ilrfilter

Immunoglobulin-like Read Filter

tcr-cdr-loop-model

Jupyter Notebook

mist

bioinf-cov-classifier

Classifying the status of COVID samples and SARS-CoV2-specific TCRs

Jupyter Notebook