Kather Lab at RWTH Aachen (@KatherLab)
Guthub

KatherLab

Twitter logo Share LinkedIn logo Share Facebook logo Share

Top repositories

1

marugoto

Tools to build deep learning pipelines.
Python
78
star
2

HIA

Histopathology Image Analysis
Python
68
star
3

deepmed

Python
41
star
4

preProcessing

Python
35
star
5

SWARM

Swarm Learning for computational pathology
Python
16
star
6

swarm-learning-hpe

Experimental repo for Odelia project based on HPE platform. This repo contains multiple models for histopathology and radiology training.
Python
12
star
7

end2end-WSI-preprocessing

End-to-end pipeline to go from raw H&E slides to normalised extracted features for training
Python
8
star
8

preprocessing-ng

Python
7
star
9

Medical_LLM

Welcome to the Medical LLM repository, your premier gateway to a structured and meticulously designed pipeline exclusively crafted for large language models (LLMs) based medical projects.
Python
7
star
10

highres-WSI-heatmaps

Python
7
star
11

llm-agent

LLM agents in medicine
Python
6
star
12

dl-mri

Deep Learning MRI image analysis
Python
6
star
13

cancer-metadata

machine-readable information for the TCGA dataset, mirrored from other sources
5
star
14

Survival

Python
4
star
15

synth-user-study

A user study investigating how realistic are synthetic images created by generative AI
Jupyter Notebook
4
star
16

wanshi-utils

Ultilities repo for visualizations and result assesments
Python
4
star
17

MediSwarm

MediSwarm is an open-source project for advancing medical deep learning using swarm intelligence and NVFlare. Developed by the Odelia consortium, it ensures data privacy through federated learning, enabling collaborative, decentralized model training across institutions for improved medical research and applications.
Python
3
star
18

Pathology_Adversarial

Jupyter Notebook
1
star
19

preprocessing-radiology

Repo for data preparation, extracting features from radimages. Adapt to marugoto attention MIL and the features are in h5
Python
1
star
20

thumbnail-classification

Python
1
star
21

crc-models-2022

trained deep learning models for biomarker prediction from colorectal cancer pathology slides, 2022 edition
1
star
22

visualizing_image_embeddings

Python
1
star
23

LLMAnonymizer-Publication

Anonymize Medical Documents using LLMs
Python
1
star